Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   AS52_RS25100 Genome accession   NZ_CP010586
Coordinates   4968512..4968874 (-) Length   120 a.a.
NCBI ID   WP_028411997.1    Uniprot ID   -
Organism   Priestia megaterium Q3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4963512..4973874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS52_RS25090 (AS52_05174) - 4964255..4966885 (+) 2631 WP_049166295.1 DEAD/DEAH box helicase -
  AS52_RS25095 (AS52_05175) - 4967183..4968229 (+) 1047 WP_028411998.1 LysM peptidoglycan-binding domain-containing protein -
  AS52_RS25100 (AS52_05176) ssbB 4968512..4968874 (-) 363 WP_028411997.1 single-stranded DNA-binding protein Machinery gene
  AS52_RS25105 (AS52_05177) - 4968971..4969408 (+) 438 WP_049166296.1 YwpF-like family protein -
  AS52_RS25110 (AS52_05179) - 4969933..4970355 (+) 423 WP_028411995.1 helix-turn-helix domain-containing protein -
  AS52_RS25115 (AS52_05180) fabZ 4970384..4970818 (-) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AS52_RS25120 (AS52_05181) - 4970902..4971723 (-) 822 WP_033580402.1 flagellar hook-basal body protein -
  AS52_RS25125 (AS52_05182) - 4971747..4972571 (-) 825 WP_033580401.1 flagellar hook-basal body protein -
  AS52_RS25130 (AS52_05183) - 4972686..4973687 (-) 1002 WP_013059791.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13412.09 Da        Isoelectric Point: 7.1647

>NTDB_id=139460 AS52_RS25100 WP_028411997.1 4968512..4968874(-) (ssbB) [Priestia megaterium Q3]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSDSSSFGSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=139460 AS52_RS25100 WP_028411997.1 4968512..4968874(-) (ssbB) [Priestia megaterium Q3]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACAAAAAAGCCGGAGCTTCGATATACCCATGAAGGGATTGCCGTATC
TACTATTACGTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACAGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGCGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCGGTTAAATTTTTAAGTGGAAAGCC
ATCTGATTCTTCTTCATTTGGTTCAAATCAACAAGAAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

93.333

0.533
  ssb Latilactobacillus sakei subsp. sakei 23K

48.8

100

0.508
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508

Multiple sequence alignment