Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGA   Type   Machinery gene
Locus tag   SB45_RS11545 Genome accession   NZ_CP010556
Coordinates   2452757..2453827 (-) Length   356 a.a.
NCBI ID   WP_043867287.1    Uniprot ID   -
Organism   Bacillus velezensis strain L-H15     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2447757..2458827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB45_RS11495 (SB45_11495) - 2447817..2448401 (-) 585 WP_012117977.1 signal peptidase I -
  SB45_RS11500 (SB45_11500) tapA 2448373..2449044 (-) 672 WP_003153099.1 amyloid fiber anchoring/assembly protein TapA -
  SB45_RS11505 (SB45_11505) - 2449303..2449632 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  SB45_RS11510 (SB45_11510) - 2449672..2449851 (-) 180 WP_003153093.1 YqzE family protein -
  SB45_RS11515 (SB45_11515) comGG 2449908..2450285 (-) 378 WP_043867284.1 competence type IV pilus minor pilin ComGG Machinery gene
  SB45_RS11520 (SB45_11520) comGF 2450286..2450786 (-) 501 WP_226565836.1 competence type IV pilus minor pilin ComGF -
  SB45_RS11525 (SB45_11525) comGE 2450695..2451009 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  SB45_RS11530 (SB45_11530) comGD 2450993..2451430 (-) 438 WP_043867285.1 competence type IV pilus minor pilin ComGD Machinery gene
  SB45_RS11535 (SB45_11535) comGC 2451420..2451728 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  SB45_RS11540 (SB45_11540) comGB 2451733..2452770 (-) 1038 WP_043867286.1 competence type IV pilus assembly protein ComGB Machinery gene
  SB45_RS11545 (SB45_11545) comGA 2452757..2453827 (-) 1071 WP_043867287.1 competence type IV pilus ATPase ComGA Machinery gene
  SB45_RS11550 (SB45_11550) - 2454025..2454975 (-) 951 WP_003153082.1 magnesium transporter CorA family protein -
  SB45_RS11555 (SB45_11555) - 2455121..2456422 (+) 1302 WP_043867288.1 hemolysin family protein -
  SB45_RS11560 (SB45_11560) - 2456460..2457290 (-) 831 WP_032856863.1 STAS domain-containing protein -
  SB45_RS11570 (SB45_11570) - 2457496..2457876 (-) 381 WP_003153079.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  SB45_RS11575 (SB45_11575) - 2458113..2458358 (+) 246 WP_003153078.1 DUF2626 domain-containing protein -

Sequence


Protein


Download         Length: 356 a.a.        Molecular weight: 40502.82 Da        Isoelectric Point: 9.4729

>NTDB_id=139268 SB45_RS11545 WP_043867287.1 2452757..2453827(-) (comGA) [Bacillus velezensis strain L-H15]
MKNIETYSRNIINEAYTARASDIHIVPREKDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEESCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=139268 SB45_RS11545 WP_043867287.1 2452757..2453827(-) (comGA) [Bacillus velezensis strain L-H15]
GTGAAAAATATTGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAAGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTCAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACGGAAACCGTTCATTTGAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAACTGTCCTTATTTCGGGGGGCGGGCGCCGCACTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTCTTTACCGGCCCGACCGGCTCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAACGGCATTTCAACCGGCGGATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGTTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATACTAG
GGGAAATCAGGGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTTGGGGTGAACATGACAGAAATTGAACAAACCGTCATTGC
CATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAGCTGTTCCGTGTACTGCCGGATGTACA
GGCAGACCCGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACAACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

82.022

100

0.82

  pilB Glaesserella parasuis strain SC1401

38.793

97.753

0.379

  pilF Thermus thermophilus HB27

37.892

98.596

0.374


Multiple sequence alignment