Detailed information    

insolico Bioinformatically predicted

Overview


Name   comP   Type   Regulator
Locus tag   SC10_RS17030 Genome accession   NZ_CP010524
Coordinates   3416577..3418892 (-) Length   771 a.a.
NCBI ID   WP_020452789.1    Uniprot ID   D9YRL1
Organism   Bacillus paralicheniformis strain BL-09     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context


Location: 3411577..3423892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC10_RS16990 (SC10_B2orf05126) - 3412042..3412473 (+) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -
  SC10_RS16995 (SC10_B2orf05127) - 3412473..3412814 (+) 342 WP_020452785.1 Na(+)/H(+) antiporter subunit C -
  SC10_RS17000 (SC10_B2orf05128) - 3412807..3414285 (+) 1479 WP_025809735.1 Na+/H+ antiporter subunit D -
  SC10_RS17005 (SC10_B2orf05130) - 3414291..3414767 (+) 477 WP_020452787.1 Na+/H+ antiporter subunit E -
  SC10_RS17010 (SC10_B2orf05131) - 3414767..3415051 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  SC10_RS17015 (SC10_B2orf05133) mnhG 3415035..3415409 (+) 375 WP_023856153.1 monovalent cation/H(+) antiporter subunit G -
  SC10_RS17020 (SC10_B2orf05134) - 3415446..3415835 (-) 390 WP_009329508.1 hotdog fold thioesterase -
  SC10_RS17025 (SC10_B2orf05136) comA 3415852..3416490 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  SC10_RS17030 (SC10_B2orf05137) comP 3416577..3418892 (-) 2316 WP_020452789.1 sensor histidine kinase Regulator
  SC10_RS17035 (SC10_B2orf05138) comX 3418913..3419083 (-) 171 WP_020452790.1 competence pheromone ComX -
  SC10_RS17040 (SC10_B2orf05139) - 3419055..3419966 (-) 912 WP_035337591.1 polyprenyl synthetase family protein -
  SC10_RS17045 (SC10_B2orf05140) degQ 3420153..3420293 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  SC10_RS17050 (SC10_B2orf05142) - 3420905..3421126 (+) 222 WP_230368259.1 hypothetical protein -
  SC10_RS17055 (SC10_B2orf05143) - 3421169..3422389 (-) 1221 WP_035337594.1 EAL and HDOD domain-containing protein -

Sequence


Protein


Download         Length: 771 a.a.        Molecular weight: 89288.10 Da        Isoelectric Point: 7.0414

>NTDB_id=138989 SC10_RS17030 WP_020452789.1 3416577..3418892(-) (comP) [Bacillus paralicheniformis strain BL-09]
MKSYYNKVSLVLILLSFIYVLYVCYLSFNNNLVGLKVKNLDEYSLEVVEVKKHTLAADYAELKEGDIIHRINGQQVPFKK
DKEYTLSNVLTLTIERNGKVFENDSLIYLDLVSYDSFFIFIIPLIFYFLCLICVYFIFKVNKSKNLFSAFLLVLFLLITS
IAYVSAGAVARGDTFSRFVNILTFLAVPTSYLHFIYRYFKEIGKTFFSNKVFLLYLIPFINLILEAGLYLFEFEGSILKS
INLLSFFISTVIVFILITYALIKFKYSQQSYLLKILMLMNFIALVPFLFFYVLPMLVFGDYIFSAIVVSPFLLLIPLSLV
YQFMSNKIYDIEFLIGRLKYYSFLAIIPTSLIITILAIVKHQEGEFFTVQVTIFTYLIMVGVFYLKEIIDFRFRLKRFSE
KFNYQDSIFKFTQTIRTFTSLNQVLMELKQIVLDVLLVNNIYMLKVKNDGSVSMLENDAEEKPWIPYEQEVTKVITDIGK
IVEVDRGFLIKIGERGGTSYVMLCLSVLNTPRLTRDEISWLETLAFYTSVSLENVLKIGELMEHLEHVKKEGPNPAWLNK
LMFAIEEKQRSDLARDLHDSVLQDMISLKHQSEMFLADFEKDKVCTNQIRQRLINMNEQMSTVIQTTRETCQELRPQLLY
DLGLVKALSKLAAQHQESSSIDKIRLNTERFSKVLDLDTQLNLYRIVQELLSNAVKHSKANEVLIMLVCIKEKVVLHYED
DGIGFDPDKLYQNSASMGLSGIRERVRALNGSLDIQTAEGKGFRVAIEMEL

Nucleotide


Download         Length: 2316 bp        

>NTDB_id=138989 SC10_RS17030 WP_020452789.1 3416577..3418892(-) (comP) [Bacillus paralicheniformis strain BL-09]
ATGAAGTCATATTATAACAAGGTTTCACTAGTTCTCATATTGTTAAGTTTTATTTATGTTCTCTATGTTTGCTATCTTAG
TTTTAATAATAATCTAGTTGGGTTAAAGGTGAAAAATCTTGATGAATACAGTCTTGAAGTTGTGGAAGTGAAAAAACACA
CTTTAGCCGCTGATTATGCAGAATTAAAAGAAGGAGATATCATTCATAGAATAAATGGGCAGCAGGTTCCATTTAAAAAA
GATAAGGAATATACATTGTCAAACGTTTTAACGTTAACAATTGAAAGAAATGGGAAAGTATTTGAGAATGATTCTCTGAT
ATATTTGGATTTAGTCAGTTATGACAGTTTTTTTATATTTATCATTCCGTTGATCTTTTACTTTTTATGTTTAATTTGTG
TGTATTTTATTTTTAAAGTAAACAAATCTAAAAATCTTTTCTCAGCATTTTTATTAGTCCTATTTCTGCTTATTACTTCT
ATAGCTTATGTTAGTGCAGGCGCAGTTGCAAGAGGTGACACTTTCAGTAGATTTGTAAATATACTTACTTTTTTAGCTGT
TCCAACTAGCTACTTACATTTTATTTATCGATACTTTAAAGAGATAGGGAAAACATTTTTCAGTAATAAAGTTTTTTTAC
TTTATTTAATACCATTTATAAACCTCATACTTGAAGCTGGTTTATACTTATTTGAATTTGAGGGAAGTATTCTAAAAAGC
ATTAACTTATTGTCGTTCTTTATTTCGACGGTCATTGTTTTTATTCTGATTACATATGCCTTAATTAAATTCAAGTATTC
TCAACAGTCCTACTTATTGAAAATATTAATGTTGATGAACTTCATTGCATTGGTACCTTTTTTGTTTTTCTATGTACTTC
CTATGCTGGTCTTTGGCGATTATATTTTCTCGGCCATTGTTGTGTCCCCGTTTCTGTTGCTGATTCCTTTATCTTTGGTA
TATCAATTTATGTCTAATAAAATATATGATATTGAATTTTTAATTGGTCGATTGAAATATTATAGTTTTTTAGCGATAAT
TCCAACTTCTTTAATTATTACTATTTTAGCCATTGTTAAGCATCAAGAAGGAGAATTTTTCACAGTACAGGTTACAATCT
TTACATATCTTATCATGGTAGGCGTTTTCTATTTAAAAGAAATTATTGATTTTCGCTTTCGGCTAAAGCGCTTTTCAGAA
AAATTTAACTACCAGGATAGTATTTTTAAATTTACTCAAACCATTCGAACATTTACGTCTTTAAATCAAGTTTTAATGGA
GTTAAAACAAATCGTTTTGGACGTGCTTCTTGTTAATAATATTTATATGCTCAAAGTAAAAAACGATGGATCGGTATCGA
TGCTAGAGAATGATGCAGAAGAAAAACCGTGGATCCCGTACGAACAAGAAGTAACCAAGGTCATCACCGACATCGGTAAA
ATCGTCGAAGTCGACCGCGGATTTTTGATTAAGATCGGTGAACGGGGCGGGACTTCTTATGTCATGCTGTGTTTGTCGGT
TTTAAATACGCCTAGGCTGACGCGCGATGAGATTTCGTGGCTTGAGACGCTGGCGTTTTATACGAGTGTTTCCCTGGAAA
ACGTCTTGAAAATCGGCGAGCTGATGGAGCATCTGGAACATGTGAAAAAAGAAGGGCCGAATCCGGCGTGGCTGAATAAA
TTGATGTTTGCGATTGAAGAGAAGCAGAGATCTGATTTGGCCCGTGATCTTCATGATTCTGTGCTGCAGGACATGATTTC
CTTGAAGCATCAAAGCGAGATGTTTCTGGCTGATTTTGAAAAAGATAAAGTCTGTACGAATCAAATCAGGCAAAGGCTCA
TCAATATGAATGAGCAAATGTCCACCGTCATCCAGACGACAAGGGAAACGTGTCAGGAGCTGAGGCCGCAGCTGTTGTAC
GATCTCGGACTGGTCAAAGCCCTTTCGAAACTGGCGGCACAGCATCAGGAGTCCTCATCGATCGATAAGATCCGCCTCAA
TACGGAAAGGTTCTCAAAGGTGCTCGACCTGGACACGCAGCTGAATTTGTACAGAATTGTGCAGGAGCTTTTAAGCAATG
CGGTTAAACACTCGAAAGCTAATGAGGTTTTGATTATGCTTGTCTGCATAAAAGAAAAAGTTGTTCTTCATTATGAAGAT
GACGGCATCGGTTTTGATCCGGACAAGCTTTATCAAAACAGCGCAAGCATGGGGCTGTCGGGCATTCGCGAGCGAGTCCG
CGCGCTGAACGGCAGTCTGGATATACAGACAGCAGAAGGGAAAGGCTTCAGGGTCGCCATTGAAATGGAATTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB D9YRL1

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

53.419

100

0.537


Multiple sequence alignment