Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   PGS_RS07390 Genome accession   NZ_CP013131
Coordinates   1729965..1732061 (-) Length   698 a.a.
NCBI ID   WP_058019246.1    Uniprot ID   -
Organism   Porphyromonas gingivalis A7A1-28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1724965..1737061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGS_RS11095 - 1725382..1725474 (-) 93 WP_230493959.1 DUF1661 domain-containing protein -
  PGS_RS10290 - 1725443..1725571 (+) 129 WP_230491671.1 DUF1661 domain-containing protein -
  PGS_RS07375 (PGS_00015370) - 1725636..1727216 (-) 1581 WP_058019243.1 sialidase family protein -
  PGS_RS07380 (PGS_00015380) - 1727643..1729100 (+) 1458 WP_058019244.1 leucine-rich repeat domain-containing protein -
  PGS_RS07385 (PGS_00015390) - 1729195..1729965 (-) 771 WP_058019245.1 HAD family hydrolase -
  PGS_RS07390 (PGS_00015400) recG/mmsA 1729965..1732061 (-) 2097 WP_058019246.1 ATP-dependent DNA helicase RecG Machinery gene
  PGS_RS07395 (PGS_00015410) galE 1732104..1733132 (-) 1029 WP_058019247.1 UDP-glucose 4-epimerase GalE -
  PGS_RS07400 (PGS_00015420) yihA 1733142..1733747 (-) 606 WP_058019248.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  PGS_RS07405 (PGS_00015430) - 1733848..1734441 (+) 594 WP_021663081.1 hypothetical protein -
  PGS_RS07410 (PGS_00015440) - 1734444..1735913 (+) 1470 WP_058019249.1 purple acid phosphatase family protein -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 78842.96 Da        Isoelectric Point: 8.5275

>NTDB_id=138908 PGS_RS07390 WP_058019246.1 1729965..1732061(-) (recG/mmsA) [Porphyromonas gingivalis A7A1-28]
MDILSTKITYLTGVGPKRAEVLKEEIEVRTYLDLLHYFPFRYVDRSRFYAIREIRSDMPYIQLRGVLRNFSEVGEGRRKR
LTATFSDGTGSIELVWFKGIKYIRDKLQEGRRYIVFGKPVFFASGYNIAHPEIDAEEKAEQVAGGLTPIYHTTERMKSMG
LGSKQLQQLLYVLLNQVSATLTETLPPYILSSYGFVSYQEAIRQIHFPQGVAQLEAARTRLKFEELFYVQLHLIGSKLER
KARFQGIVFAQVGALFNTFYKEHLPFELTGAQKKVVREIRQDTLSGHQMNRLVQGDVGSGKTLVALLSMLLALDNGCQAC
LMAPTEILARQHHHTLSELLRPLGIEVGLLIGSCTARQRERLLPRLADGSLSIVVGTHALLEQGVAFRCLGMAVIDEQHR
FGVQQRARLWEKNLDTLPHILIMSATPIPRTLAMTLYGDLDISIIDELPPGRKPIQTLHHFDNDMAPVFRFLRSQLAAGR
QVYVVYPMIEGSETTDLKNLEDGFELFSSIFPDEGVTMVHGKMKAKEKEARMADFVSGRSRILLATTVIEVGVNVPNATV
MVVENADRFGLSQLHQLRGRVGRGGEQSYCILITGTKTGEDSRRRIQVMVETNDGFEIAEEDMRLRGFGDLEGTRQSGRQ
ISLRIANPARDTELIALSRSIAEQLLERGPELRHPDNQMLALRLNKLFPKEEDWSVIS

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=138908 PGS_RS07390 WP_058019246.1 1729965..1732061(-) (recG/mmsA) [Porphyromonas gingivalis A7A1-28]
ATGGATATCCTATCGACCAAAATCACTTACCTGACCGGCGTAGGGCCGAAGCGGGCGGAAGTACTGAAGGAGGAAATAGA
AGTACGTACCTATCTGGATCTTCTCCATTATTTCCCCTTTCGCTATGTCGATAGGAGTCGATTTTATGCCATACGGGAGA
TACGCTCCGATATGCCCTATATCCAGCTGCGCGGTGTCCTTCGCAACTTCTCCGAGGTGGGCGAAGGACGGCGCAAGCGA
CTGACGGCTACTTTCTCGGACGGTACGGGAAGCATAGAGCTGGTTTGGTTCAAGGGTATCAAGTACATACGCGACAAACT
GCAGGAAGGACGGCGATATATCGTTTTCGGCAAGCCAGTTTTCTTCGCTTCCGGCTATAACATAGCACATCCCGAAATAG
ATGCGGAGGAGAAGGCAGAGCAGGTAGCCGGCGGACTGACTCCGATTTATCACACCACAGAGCGCATGAAGAGTATGGGG
CTGGGCAGCAAACAACTCCAGCAACTCCTGTACGTACTCCTCAATCAGGTATCAGCCACACTGACGGAGACACTGCCGCC
TTACATCCTTTCGTCTTATGGGTTCGTCTCCTATCAGGAGGCCATCAGACAGATTCATTTCCCTCAGGGGGTGGCACAGC
TGGAAGCTGCCCGTACAAGACTCAAGTTCGAAGAGCTGTTCTATGTGCAGCTGCATCTGATCGGCAGCAAGCTGGAGCGT
AAAGCGCGTTTTCAGGGAATTGTTTTTGCTCAAGTGGGAGCCTTGTTCAATACATTCTACAAGGAACATCTGCCTTTCGA
ACTGACCGGTGCGCAGAAAAAGGTGGTACGGGAGATCCGGCAGGATACCCTCAGCGGACATCAAATGAACCGACTGGTGC
AGGGCGATGTGGGTAGTGGTAAAACTTTGGTAGCCTTGCTGTCCATGCTGTTGGCTCTGGACAATGGCTGTCAGGCTTGC
CTGATGGCTCCGACCGAAATTCTCGCCAGACAGCATCATCATACCCTGTCCGAACTGTTGCGACCGCTTGGCATAGAAGT
CGGTTTGCTCATCGGAAGCTGTACCGCACGTCAGCGGGAACGCTTGCTTCCGCGTCTGGCCGATGGCTCGCTCTCCATCG
TCGTTGGTACGCATGCCCTATTGGAACAGGGAGTGGCCTTTCGTTGTTTGGGAATGGCTGTCATAGACGAGCAGCACCGA
TTCGGCGTACAGCAGCGAGCCCGCTTGTGGGAAAAGAACCTCGACACTCTGCCCCATATTCTGATTATGAGTGCCACCCC
CATACCTCGTACATTGGCCATGACGTTATACGGCGATCTGGATATTTCCATCATTGACGAATTGCCTCCCGGCCGTAAGC
CCATACAGACGCTCCACCACTTCGACAACGATATGGCTCCTGTCTTTCGTTTCCTGCGATCTCAGCTTGCCGCAGGCCGG
CAGGTATATGTGGTGTATCCGATGATCGAGGGGTCGGAGACGACCGATCTGAAGAATCTTGAAGATGGCTTCGAGCTGTT
CTCTTCCATTTTCCCCGATGAGGGCGTGACGATGGTGCACGGCAAGATGAAAGCCAAGGAAAAGGAGGCACGTATGGCGG
ACTTCGTCAGCGGTCGCTCCCGTATCTTGTTGGCTACGACGGTTATCGAAGTCGGAGTGAATGTCCCCAATGCTACGGTG
ATGGTAGTGGAGAATGCCGATCGTTTCGGCCTGTCGCAGCTACACCAGCTTAGAGGACGTGTAGGCCGCGGAGGAGAGCA
AAGCTATTGCATCCTGATCACGGGAACGAAAACAGGAGAGGATTCGCGTCGGCGTATTCAGGTGATGGTGGAGACGAATG
ATGGATTCGAAATAGCAGAGGAAGATATGCGCCTTCGTGGTTTCGGCGACTTGGAGGGTACGCGCCAGAGCGGTCGTCAG
ATCAGCCTTCGGATAGCCAATCCCGCACGAGATACGGAGCTGATAGCTCTTTCCCGAAGTATAGCGGAGCAACTACTGGA
GCGCGGCCCCGAACTTCGCCATCCCGACAATCAAATGCTGGCTCTTCGTCTGAACAAACTTTTCCCCAAGGAAGAAGACT
GGAGTGTCATAAGCTAA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(612-698)

RecG wedge domain (RecG_wedge)

(8-157)

DEAD/DEAH box helicase (DEAD)

(272-431)

Helicase conserved C-terminal domain (Helicase_C)

(477-585)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

40.822

97.564

0.398
  recG/mmsA Streptococcus pneumoniae R36A

40.822

97.564

0.398
  recG Neisseria meningitidis strain C311

41.882

94.413

0.395
  recG Bacillus subtilis subsp. subtilis str. 168

38.416

97.708

0.375