Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   DW68_RS01095 Genome accession   NZ_CP013124
Coordinates   237245..239320 (-) Length   691 a.a.
NCBI ID   WP_017360511.1    Uniprot ID   A0ABM5VR28
Organism   Ectopseudomonas mendocina S5.2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 232245..244320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DW68_RS01070 (DW68_001070) - 232738..233886 (+) 1149 WP_017360512.1 NAD(P)/FAD-dependent oxidoreductase -
  DW68_RS01075 (DW68_001075) - 234075..234347 (+) 273 WP_003242571.1 HU family DNA-binding protein -
  DW68_RS01080 (DW68_001080) - 234497..234892 (+) 396 WP_013717769.1 hypothetical protein -
  DW68_RS01085 (DW68_001085) - 234975..235727 (+) 753 WP_172825327.1 hypothetical protein -
  DW68_RS01090 (DW68_001090) - 235747..237153 (-) 1407 WP_013717767.1 aminoacyl-tRNA deacylase and HDOD domain-containing protein -
  DW68_RS01095 (DW68_001095) recG 237245..239320 (-) 2076 WP_017360511.1 ATP-dependent DNA helicase RecG Machinery gene
  DW68_RS01100 (DW68_001100) - 239329..240258 (-) 930 WP_017360510.1 hydrogen peroxide-inducible genes activator -
  DW68_RS01105 (DW68_001105) - 240462..241319 (+) 858 WP_017360509.1 NAD-dependent epimerase/dehydratase family protein -
  DW68_RS01110 (DW68_001110) - 241321..242121 (+) 801 WP_017360508.1 AraC family transcriptional regulator -
  DW68_RS01115 (DW68_001115) - 242111..242662 (-) 552 WP_017360507.1 AAA family ATPase -
  DW68_RS01120 (DW68_001120) - 242741..243358 (+) 618 WP_017360506.1 LysE family translocator -
  DW68_RS01125 (DW68_001125) - 243395..244120 (-) 726 WP_017360505.1 hypothetical protein -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 76108.66 Da        Isoelectric Point: 7.1192

>NTDB_id=138807 DW68_RS01095 WP_017360511.1 237245..239320(-) (recG) [Ectopseudomonas mendocina S5.2]
MSELSAVPVTALKGVGAALAEKLAKVGLENLQDVLFHLPLRYQDRTRITPIGALRPGQDAVVEGIVAGADVVMGRRRSLL
VRLQDGSGTLSLRFFHFSQAQKEGLKRGTALRCYGEVRPGATGLEIYHPEYRAQSGDEPAPVEQSLTPIYPTTEGLTQQR
LRQLSQQALARLGPRSLPDWLPDELARDYRLAPLDEAIRYLHRPPPDADVEELAEGRHWAQHRLAFEELLTHQLSLQRLR
EQVRAQQAPALPPAKKLPQQYLANLGFAPTGAQQRVGAEIAYDLAQSEPMLRLVQGDVGAGKTVVAALAALQALEAGYQV
ALMAPTEILAEQHFLNFSKWLAPLGLEVAWLAGKLKGKARAAALDQIAAGCPMVVGTHALFQDEVKFKRLALVIIDEQHR
FGVQQRLALRQKGIDGRLSPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTLVIADSRRIEVVERVRNACQQ
GRQAYWVCTLIEESEELTCQAAETSYEELSAALGELRVGLIHGRMKPAEKAAVMEEFKQGRLQLLVATTVIEVGVDVPNA
SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHAPLSQLGRERLAIMRETTDGFVIAEKDLELRGPGEMLGTRQTG
LLQFKVADLMRDADLLPAVRDAAQALLEHWPQHVAPLLERWLRHGQQYGQV

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=138807 DW68_RS01095 WP_017360511.1 237245..239320(-) (recG) [Ectopseudomonas mendocina S5.2]
GTGAGCGAGCTGTCAGCGGTTCCCGTCACCGCGCTGAAAGGCGTAGGCGCCGCGCTGGCGGAAAAACTGGCCAAGGTCGG
CCTGGAAAACCTGCAGGATGTGCTGTTCCACCTGCCGCTGCGCTATCAGGATCGCACCCGCATCACCCCCATTGGCGCCC
TGCGACCCGGGCAGGATGCGGTGGTCGAGGGCATCGTTGCCGGTGCCGACGTGGTCATGGGCCGGCGGCGCAGCCTGCTG
GTGCGTCTGCAGGACGGCAGTGGCACGCTGAGCCTGCGCTTCTTCCATTTCAGCCAGGCGCAGAAGGAAGGGCTCAAACG
CGGCACGGCGCTGCGCTGCTATGGCGAAGTGCGCCCCGGCGCCACCGGCCTGGAGATCTATCACCCGGAGTATCGCGCGC
AGAGCGGCGACGAGCCGGCCCCGGTGGAGCAGAGCCTGACGCCCATCTATCCGACCACCGAAGGCCTGACCCAGCAACGC
CTGCGCCAGCTCAGTCAGCAGGCGCTGGCGCGCCTGGGCCCGCGCAGCCTGCCAGACTGGCTGCCTGACGAGCTGGCCCG
CGACTATCGCCTGGCGCCTTTGGATGAGGCCATCCGTTATCTGCATCGCCCGCCGCCGGACGCCGATGTCGAAGAACTCG
CCGAGGGCCGTCACTGGGCGCAACACCGCCTGGCCTTCGAGGAATTGCTGACCCATCAGCTGTCCCTGCAGCGCCTGCGC
GAACAGGTGCGCGCGCAACAGGCGCCGGCGCTGCCGCCAGCGAAGAAGCTGCCGCAGCAATACCTTGCCAACCTCGGCTT
CGCCCCCACCGGCGCGCAGCAGCGCGTCGGTGCCGAGATCGCCTATGACCTGGCGCAAAGCGAGCCGATGCTGCGCCTGG
TGCAGGGCGACGTCGGTGCCGGCAAGACGGTGGTCGCCGCCCTGGCTGCATTGCAGGCGCTGGAGGCCGGCTACCAGGTG
GCATTGATGGCGCCCACCGAAATTCTCGCCGAGCAGCACTTCCTCAACTTCAGCAAATGGCTGGCACCGCTTGGCCTGGA
AGTGGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGGCCCGCGCCGCCGCACTGGATCAGATCGCCGCTGGTTGCCCGATGG
TGGTCGGCACCCATGCCCTGTTCCAGGACGAGGTGAAGTTCAAACGCCTGGCCCTCGTGATCATCGACGAGCAGCACCGC
TTCGGCGTGCAGCAACGCCTGGCCTTGCGCCAGAAAGGCATCGACGGGCGCTTGAGCCCGCATCAGCTGATCATGACCGC
CACACCTATCCCACGCACCCTGGCGATGAGCGCCTACGCCGATCTGGATACCTCGATTCTCGACGAGCTGCCGCCGGGAC
GTACACCGGTCAATACCCTGGTGATCGCCGACAGCCGCCGCATCGAGGTGGTCGAGCGCGTGCGCAACGCCTGCCAGCAG
GGTCGCCAGGCCTACTGGGTGTGCACGCTGATCGAAGAGTCAGAGGAACTGACCTGCCAGGCTGCGGAAACCAGCTACGA
GGAGCTGTCCGCCGCACTTGGCGAGCTGCGCGTCGGGCTGATCCACGGGCGCATGAAACCGGCCGAAAAGGCCGCAGTGA
TGGAAGAATTCAAGCAGGGCAGATTGCAGCTGCTGGTGGCAACCACGGTAATCGAGGTGGGCGTCGATGTCCCCAACGCC
AGCCTGATGATCATCGAAAACCCCGAGCGCCTTGGCCTGGCCCAACTGCACCAGTTGCGCGGCCGGGTTGGTCGGGGCAG
TGCAGCCAGCCACTGCGTGCTGCTCTACCACGCACCGCTGTCGCAGCTCGGCCGCGAACGCCTGGCGATCATGCGTGAAA
CCACCGATGGCTTCGTTATCGCCGAGAAGGATCTGGAACTGCGCGGCCCCGGTGAAATGCTCGGTACCCGGCAGACCGGT
CTGCTGCAGTTCAAAGTCGCCGACCTGATGCGCGACGCCGATCTGCTGCCTGCAGTTCGCGATGCCGCACAGGCACTTTT
GGAACATTGGCCACAACATGTGGCTCCATTGTTGGAACGCTGGTTGCGTCATGGCCAGCAATACGGTCAAGTGTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(479-586)

DEAD/DEAH box helicase (DEAD)

(293-430)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-675)

RecG wedge domain (RecG_wedge)

(12-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

51.416

97.106

0.499
  recG/mmsA Streptococcus pneumoniae R6

41.691

97.54

0.407
  recG/mmsA Streptococcus pneumoniae R36A

41.691

97.54

0.407
  recG Bacillus subtilis subsp. subtilis str. 168

39.822

97.395

0.388

Multiple sequence alignment