Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   RC34_RS08240 Genome accession   NZ_CP010500
Coordinates   1559388..1559699 (-) Length   103 a.a.
NCBI ID   WP_002932309.1    Uniprot ID   A0A5T1CZI8
Organism   Campylobacter jejuni strain CJ677CC528     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1554388..1564699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC34_RS08220 (RC34_08185) ctsE 1555257..1556816 (-) 1560 WP_032598692.1 GspE/PulE family protein Machinery gene
  RC34_RS08225 (RC34_08190) ctsX 1556806..1557393 (-) 588 WP_002932306.1 hypothetical protein Machinery gene
  RC34_RS08230 (RC34_08195) ctsP 1557397..1558005 (-) 609 WP_002932308.1 ATP-binding protein Machinery gene
  RC34_RS08235 (RC34_08200) mshL 1557998..1559410 (-) 1413 Protein_1610 pilus (MSHA type) biogenesis protein MshL -
  RC34_RS08240 (RC34_08205) ctsR 1559388..1559699 (-) 312 WP_002932309.1 hypothetical protein Machinery gene
  RC34_RS08245 (RC34_08210) nifJ 1559723..1563283 (-) 3561 WP_002932311.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  RC34_RS08250 (RC34_08215) - 1563376..1564017 (-) 642 WP_002932313.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12431.31 Da        Isoelectric Point: 6.4656

>NTDB_id=138560 RC34_RS08240 WP_002932309.1 1559388..1559699(-) (ctsR) [Campylobacter jejuni strain CJ677CC528]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIILDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=138560 RC34_RS08240 WP_002932309.1 1559388..1559699(-) (ctsR) [Campylobacter jejuni strain CJ677CC528]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATACTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1CZI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

98.058

100

0.981

Multiple sequence alignment