Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   RC16_RS06965 Genome accession   NZ_CP010468
Coordinates   1335665..1336843 (-) Length   392 a.a.
NCBI ID   WP_002932300.1    Uniprot ID   A0A5T1D2G9
Organism   Campylobacter jejuni strain CJ677CC064     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1330665..1341843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC16_RS06935 (RC16_06930) - 1331207..1331548 (+) 342 WP_002932295.1 hypothetical protein -
  RC16_RS06940 (RC16_06935) flgM 1331611..1331808 (+) 198 WP_002792053.1 flagellar biosynthesis anti-sigma factor FlgM -
  RC16_RS06945 (RC16_06940) - 1331850..1332284 (+) 435 WP_002779263.1 flagellar protein FlgN -
  RC16_RS06950 (RC16_06945) flgK 1332294..1334120 (+) 1827 WP_002932296.1 flagellar hook-associated protein FlgK -
  RC16_RS06955 (RC16_06950) - 1334137..1334901 (+) 765 WP_002932297.1 TIGR02757 family protein -
  RC16_RS06960 (RC16_06955) - 1334904..1335668 (+) 765 WP_002932298.1 TSUP family transporter -
  RC16_RS06965 (RC16_06960) ctsF 1335665..1336843 (-) 1179 WP_002932300.1 type II secretion system F family protein Machinery gene
  RC16_RS06970 (RC16_06965) ctsE 1336840..1338399 (-) 1560 WP_032598692.1 GspE/PulE family protein Machinery gene
  RC16_RS06975 (RC16_06970) ctsX 1338389..1338976 (-) 588 WP_002932306.1 hypothetical protein Machinery gene
  RC16_RS06980 (RC16_06975) ctsP 1338980..1339588 (-) 609 WP_002932308.1 ATP-binding protein Machinery gene
  RC16_RS06985 (RC16_06980) mshL 1339581..1340993 (-) 1413 Protein_1368 pilus (MSHA type) biogenesis protein MshL -
  RC16_RS06990 (RC16_06985) ctsR 1340971..1341282 (-) 312 WP_002932309.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 45674.31 Da        Isoelectric Point: 9.0938

>NTDB_id=137734 RC16_RS06965 WP_002932300.1 1335665..1336843(-) (ctsF) [Campylobacter jejuni strain CJ677CC064]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGINF

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=137734 RC16_RS06965 WP_002932300.1 1335665..1336843(-) (ctsF) [Campylobacter jejuni strain CJ677CC064]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTGGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCTCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGCGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCCAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGTGTTGCGATGAAAAGCGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTAATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGTTCAGGTATAAATTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1D2G9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.469

100

0.985

Multiple sequence alignment