Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   RC16_RS06990 Genome accession   NZ_CP010468
Coordinates   1340971..1341282 (-) Length   103 a.a.
NCBI ID   WP_002932309.1    Uniprot ID   A0A5T1CZI8
Organism   Campylobacter jejuni strain CJ677CC064     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1335971..1346282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC16_RS06970 (RC16_06965) ctsE 1336840..1338399 (-) 1560 WP_032598692.1 GspE/PulE family protein Machinery gene
  RC16_RS06975 (RC16_06970) ctsX 1338389..1338976 (-) 588 WP_002932306.1 hypothetical protein Machinery gene
  RC16_RS06980 (RC16_06975) ctsP 1338980..1339588 (-) 609 WP_002932308.1 ATP-binding protein Machinery gene
  RC16_RS06985 (RC16_06980) mshL 1339581..1340993 (-) 1413 Protein_1368 pilus (MSHA type) biogenesis protein MshL -
  RC16_RS06990 (RC16_06985) ctsR 1340971..1341282 (-) 312 WP_002932309.1 hypothetical protein Machinery gene
  RC16_RS06995 (RC16_06990) nifJ 1341306..1344866 (-) 3561 WP_002932311.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  RC16_RS07000 (RC16_06995) - 1344959..1345600 (-) 642 WP_002932313.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12431.31 Da        Isoelectric Point: 6.4656

>NTDB_id=137738 RC16_RS06990 WP_002932309.1 1340971..1341282(-) (ctsR) [Campylobacter jejuni strain CJ677CC064]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIILDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=137738 RC16_RS06990 WP_002932309.1 1340971..1341282(-) (ctsR) [Campylobacter jejuni strain CJ677CC064]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATACTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1CZI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

98.058

100

0.981

Multiple sequence alignment