Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACT75_RS06410 Genome accession   NZ_CP012959
Coordinates   1325485..1326120 (+) Length   211 a.a.
NCBI ID   WP_005594855.1    Uniprot ID   A0A5D0EK75
Organism   Aggregatibacter actinomycetemcomitans strain 624     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1320485..1331120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACT75_RS06390 (ACT75_06385) xylA 1321173..1322492 (+) 1320 WP_005541843.1 xylose isomerase -
  ACT75_RS06395 (ACT75_06390) xylB 1322542..1324014 (+) 1473 Protein_1281 xylulokinase -
  ACT75_RS06400 (ACT75_06395) - 1324609..1324854 (+) 246 Protein_1282 bacteriophage T4 gp5 trimerisation domain-containing protein -
  ACT75_RS06410 (ACT75_06405) sxy/tfoX 1325485..1326120 (+) 636 WP_005594855.1 TfoX/Sxy family DNA transformation protein Regulator
  ACT75_RS06415 (ACT75_06410) rpoH 1326187..1327035 (-) 849 WP_005548833.1 RNA polymerase sigma factor RpoH -
  ACT75_RS06420 (ACT75_06415) - 1327220..1327534 (-) 315 Protein_1285 DUF2322 family protein -
  ACT75_RS06425 (ACT75_06420) murB 1327550..1328575 (-) 1026 WP_005541968.1 UDP-N-acetylmuramate dehydrogenase -
  ACT75_RS06430 (ACT75_06425) narQ 1328590..1330293 (-) 1704 WP_032998607.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  ACT75_RS06435 (ACT75_06430) - 1330569..1330853 (+) 285 WP_005548831.1 chaperone NapD -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23994.17 Da        Isoelectric Point: 10.4976

>NTDB_id=137738 ACT75_RS06410 WP_005594855.1 1325485..1326120(+) (sxy/tfoX) [Aggregatibacter actinomycetemcomitans strain 624]
MTTVSQRLKNEFKQLVDGEISIKNLFTGHGIFHSGIMFALHQNDSIFLRAEDELVPYLESLGAVAYSIDPNNTNKLALHR
YYQLPHSIRKNKPLFEKTVKLSIQQAKFKKIAEDLTKKERIKELANFSIKHERLLAKINIYTVSEFQKIGAIHSYVRLKK
LGVSANVELLWTLCAALKNKHASLLTEKEKSAILTKLNVLLAANGLRKVKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=137738 ACT75_RS06410 WP_005594855.1 1325485..1326120(+) (sxy/tfoX) [Aggregatibacter actinomycetemcomitans strain 624]
ATGACAACGGTATCTCAAAGACTCAAGAACGAATTCAAACAACTAGTAGATGGTGAAATCAGTATTAAAAATTTATTCAC
CGGACATGGTATATTTCATTCAGGAATAATGTTTGCACTTCATCAAAACGATAGCATTTTCTTGCGGGCTGAAGATGAGT
TAGTCCCTTACTTAGAAAGTTTAGGTGCTGTAGCTTATTCAATTGATCCCAATAATACGAATAAACTGGCACTCCACCGT
TACTATCAACTTCCTCATTCTATTCGTAAAAATAAGCCGTTATTTGAAAAAACCGTTAAATTGTCTATTCAACAGGCAAA
ATTTAAGAAAATCGCTGAAGATTTGACAAAAAAAGAGCGAATTAAAGAATTGGCTAATTTTTCCATTAAGCATGAAAGAT
TGCTGGCTAAAATTAATATTTATACGGTAAGTGAATTTCAGAAGATCGGCGCAATTCACAGCTATGTTAGGTTAAAGAAA
CTGGGTGTTTCTGCCAACGTAGAATTGTTATGGACTTTATGCGCCGCATTAAAAAATAAGCATGCTTCGTTGCTTACGGA
AAAGGAAAAATCGGCAATTTTGACTAAATTAAATGTTTTACTTGCAGCAAATGGTTTGCGGAAAGTAAAGGTTTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(118-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D0EK75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

40.513

92.417

0.374
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

36.538

98.578

0.36

Multiple sequence alignment