Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   RC47_RS06530 Genome accession   NZ_CP010466
Coordinates   1256816..1258375 (-) Length   519 a.a.
NCBI ID   WP_059110980.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC541     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1251816..1263375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC47_RS06505 (RC47_06500) - 1251826..1252260 (+) 435 WP_059110979.1 flagellar protein FlgN -
  RC47_RS06510 (RC47_06505) flgK 1252270..1254096 (+) 1827 WP_002932296.1 flagellar hook-associated protein FlgK -
  RC47_RS06515 (RC47_06510) - 1254113..1254877 (+) 765 WP_002932297.1 TIGR02757 family protein -
  RC47_RS06520 (RC47_06515) - 1254880..1255644 (+) 765 WP_002932298.1 TSUP family transporter -
  RC47_RS06525 (RC47_06520) ctsF 1255641..1256819 (-) 1179 WP_002932300.1 type II secretion system F family protein Machinery gene
  RC47_RS06530 (RC47_06525) ctsE 1256816..1258375 (-) 1560 WP_059110980.1 GspE/PulE family protein Machinery gene
  RC47_RS06535 (RC47_06530) ctsX 1258365..1258952 (-) 588 WP_002932306.1 hypothetical protein Machinery gene
  RC47_RS06540 (RC47_06535) ctsP 1258956..1259564 (-) 609 WP_002932308.1 ATP-binding protein Machinery gene
  RC47_RS06545 (RC47_06540) mshL 1259557..1260969 (-) 1413 Protein_1291 pilus (MSHA type) biogenesis protein MshL -
  RC47_RS06550 (RC47_06545) ctsR 1260947..1261258 (-) 312 WP_002932309.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 60033.80 Da        Isoelectric Point: 5.7035

>NTDB_id=137681 RC47_RS06530 WP_059110980.1 1256816..1258375(-) (ctsE) [Campylobacter jejuni strain CJ677CC541]
MESRMDKIFQAYIDNEISLDEICAKFNITSWDFFKKLANFCNLHFVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMI
IRSKPCSLELLEQVKTFMICEKIDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENQKRDDQSCISQIFDFLLHEI
LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDVYEALVFHVKFLACLNLAESRKTQDGSFELDFENERYDFRASCL
PLIYGESVVIRILKHNKEILDLYKLNLGDKNLEILKKILHRPNGVILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDP
IEYKIPLVQQILLNSKVGVEFNSILRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALSTIDRLLDMQ
AKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERCHHSGFFGRELIAECLEINEDLACAIRENQD
KTILMELAKKYGFQTMFEQGLKKAKEGLTSIDELLRVVR

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=137681 RC47_RS06530 WP_059110980.1 1256816..1258375(-) (ctsE) [Campylobacter jejuni strain CJ677CC541]
ATGGAAAGTAGAATGGATAAAATTTTTCAAGCTTATATTGATAATGAAATAAGTCTTGATGAAATTTGCGCTAAATTTAA
TATCACTTCTTGGGATTTTTTTAAAAAATTAGCAAATTTTTGTAATTTACATTTTGTTGATTTAGATGAAGATAATGATT
TTATTTATGAAGGTATACCTTTTTCTTTACTTTTAAAATTTAAATTTCTGCTTATTAAAAACAATGACGGCTTTATGATT
ATTAGATCTAAACCTTGTTCTTTAGAGCTTTTAGAGCAAGTTAAGACTTTTATGATTTGTGAAAAAATCGACACTGCAAT
TGCCGATGAATTAAAGATAGCTAAAATTTTAAATCAAATTCGCATTCAAGAGGAGATTAAAAGATTAAGTATTAAGCTTA
GACTTGAATGGCAAGAAAATCAAAAAAGAGATGATCAAAGTTGCATCAGTCAAATTTTTGATTTTTTATTACATGAAATT
TTATCTTTTCATGCGAGTGATATTCATATAGAAGCAAGGAATGATGACGCTTTGATTAGGTTTAGGGTTGATGGAATTTT
GCGTGAATTTGCTATTTTTGAGAAGGATGTTTATGAAGCTTTGGTTTTTCATGTCAAATTTTTAGCTTGTTTGAATTTAG
CTGAATCAAGAAAAACACAAGATGGAAGTTTTGAATTAGATTTTGAAAATGAAAGATATGATTTTCGTGCTTCATGTTTG
CCTTTGATTTATGGCGAAAGTGTTGTTATAAGAATTTTAAAACATAATAAAGAAATTTTGGATTTGTATAAACTAAATCT
TGGAGATAAAAATTTAGAAATTTTAAAAAAGATTTTACATCGTCCCAATGGAGTGATTTTATTAACCGGCCCTACTGGTA
GTGGTAAAAGTACAACTTTATACGCGTGTTTAAATGAGTTGAAAAGTATTGAAAAAAAGATTATTTCAGCAGAAGATCCT
ATAGAATATAAAATTCCTTTAGTGCAGCAAATTTTGCTTAATTCAAAAGTTGGAGTCGAGTTTAATAGTATTTTAAGAGC
AATTTTAAGGCAAGATCCTGATATTATCATGATAGGAGAAATTCGCGATGAAGAAAGTTTAGATATTGCACTTAAAGCTT
CTTTAACAGGTCATTTGCTTTTAAGCACCTTGCATACTAATGATGCTCTTAGTACCATTGATAGGCTTTTGGATATGCAA
GCAAAAAGTTACTTGATAGCATCGGCTTTGAGTCTTGTTATAGCACAGCGTTTGGTTAGAAAACTTTGTCCTTGGTGCAA
ACAAAAAAGTAAAAAACATTATATTGAATTTGAAGGTGAATTTTTTGAACCAAAAGGATGTGAGCGTTGTCATCATAGTG
GATTTTTTGGCAGAGAATTAATCGCTGAATGCTTAGAGATCAATGAAGATTTAGCTTGTGCAATTAGGGAAAATCAAGAT
AAAACGATTTTAATGGAGCTTGCAAAAAAATATGGCTTTCAAACTATGTTTGAACAAGGTTTAAAAAAAGCCAAAGAAGG
TCTTACAAGTATAGATGAGCTTTTAAGGGTTGTAAGATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(157-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

98.459

100

0.985

Multiple sequence alignment