Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACT74_RS04050 Genome accession   NZ_CP012958
Coordinates   857954..860035 (-) Length   693 a.a.
NCBI ID   WP_005572394.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain VT1169     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 852954..865035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACT74_RS04040 (ACT74_04035) murI 856606..857433 (-) 828 WP_005548345.1 glutamate racemase -
  ACT74_RS04045 (ACT74_04040) - 857464..857961 (-) 498 WP_005548348.1 chorismate--pyruvate lyase family protein -
  ACT74_RS04050 (ACT74_04045) recG 857954..860035 (-) 2082 WP_005572394.1 ATP-dependent DNA helicase RecG Machinery gene
  ACT74_RS04055 (ACT74_04050) spoT 860036..862159 (-) 2124 WP_005590232.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  ACT74_RS04060 (ACT74_04055) rpoZ 862205..862471 (-) 267 WP_005538631.1 DNA-directed RNA polymerase subunit omega -
  ACT74_RS04065 (ACT74_04060) gmk 862529..863167 (-) 639 WP_005548354.1 guanylate kinase -
  ACT74_RS04070 (ACT74_04065) gap 863409..864413 (+) 1005 WP_061869890.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  ACT74_RS04075 (ACT74_04070) - 864507..864923 (-) 417 WP_005541059.1 EamA family transporter -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77550.11 Da        Isoelectric Point: 8.4280

>NTDB_id=137675 ACT74_RS04050 WP_005572394.1 857954..860035(-) (recG) [Aggregatibacter actinomycetemcomitans strain VT1169]
MSTQLLDAIPLTAISGVGAAVAEKLGKLGIFNLQDLLFHLPLRYEDRTRITPIADLQAEQYATIEGVVQSSEVQFGRRPM
LMVYLSDGTAKLALRFFNFNAGMKNSLQPGARVKAFGEVRRGRFMAEIHHPEYQIIHDNKPLVLAETLTPIYPATEGLKQ
TALRKLIAQALLVLDKTPIAELLPAECNPHPFDLKFAIQFLHNPPPDVSLTTLEEGRHPAQQRLIFEELLAYNLAMQKVR
SGIQANFAEPLSYQSDLKARFLAQLPFQPTNAQLRVTEDIERDVAQPYPMMRLVQGDVGSGKTLVAALAALLAIDNGKQV
ALMAPTEILAEQHAVNFRRWFEPLGIQVGWLAGKVKGKQRVAELEKIKSGAVQMVVGTHALFQEEVEFHRLSLVIVDEQH
RFGVHQRLMLREKGNQAGVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTIAISEDRRAEIIERVNVACT
QEKRQAYWVCTLIDESEMLEAQAAEAVAEDLRKILPHLRIGLVHGRMKPNEKQAVMAQFKLAELDLLVATTVIEVGVDVP
NASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLIYKPPLGKISQKRLQVMRDTQDGFVISEKDLEIRGPGEVLGTKQ
TGITEFKVANLMRDRKMLPTVQFYAKQLVQKYPQTADLLIRRWLNNREIYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=137675 ACT74_RS04050 WP_005572394.1 857954..860035(-) (recG) [Aggregatibacter actinomycetemcomitans strain VT1169]
ATGAGCACCCAATTATTAGATGCGATTCCGTTAACGGCAATTTCCGGTGTTGGTGCCGCTGTGGCGGAAAAGTTAGGTAA
ATTGGGGATCTTCAATCTGCAAGATCTGTTATTTCACCTTCCCCTCCGTTATGAAGATCGCACCCGCATCACACCCATTG
CCGATTTGCAGGCAGAGCAGTACGCCACTATTGAAGGCGTCGTGCAAAGTAGCGAAGTGCAATTCGGGCGTCGTCCGATG
TTGATGGTCTATCTTTCCGACGGTACCGCCAAATTGGCGTTGCGCTTTTTTAATTTTAACGCCGGTATGAAAAACAGCTT
GCAGCCAGGTGCTCGGGTGAAAGCCTTTGGTGAGGTGCGTCGCGGGCGTTTCATGGCGGAAATTCATCATCCTGAATATC
AGATTATTCATGACAATAAACCGCTGGTTCTGGCAGAAACCCTCACGCCCATTTACCCTGCTACGGAAGGGTTGAAACAA
ACCGCTTTGCGAAAATTAATTGCGCAAGCCTTGTTGGTGTTGGATAAAACGCCCATAGCCGAATTGTTACCGGCGGAATG
TAATCCGCATCCTTTTGATTTAAAATTCGCCATTCAGTTCTTACATAACCCGCCACCCGATGTGTCATTAACGACCTTGG
AAGAAGGTAGACATCCCGCCCAGCAACGACTGATTTTTGAAGAGTTGCTGGCATATAACCTGGCGATGCAAAAAGTGCGG
TCAGGAATTCAAGCGAATTTTGCCGAGCCTTTGTCGTATCAATCAGATTTAAAAGCACGTTTTTTAGCGCAGTTGCCGTT
TCAGCCGACAAATGCACAGTTGCGTGTGACGGAAGATATTGAACGGGATGTGGCGCAACCTTACCCGATGATGCGTCTGG
TGCAGGGGGATGTCGGCTCCGGTAAAACCTTAGTGGCGGCGTTAGCGGCACTGCTCGCCATTGATAACGGTAAACAGGTG
GCATTGATGGCGCCGACGGAAATCTTAGCGGAACAGCACGCCGTGAACTTCCGCCGTTGGTTTGAACCGCTTGGCATTCA
AGTGGGCTGGCTGGCAGGAAAAGTCAAAGGCAAACAACGGGTTGCCGAGCTAGAGAAAATAAAAAGCGGTGCGGTACAAA
TGGTGGTGGGAACGCACGCGTTATTCCAGGAAGAGGTGGAATTTCATCGTTTGAGCTTGGTGATTGTTGACGAACAGCAC
CGTTTCGGCGTGCACCAACGACTCATGCTGCGGGAAAAAGGTAATCAGGCAGGCGTGTATCCTCATCAGTTAATCATGAC
CGCCACACCGATTCCACGTACGCTTGCCATGACGGTGTATGCGGATTTGGATACTTCGATTATCGACGAATTGCCACCGG
GGCGCACGCCGATTACCACCATTGCAATTTCCGAAGATCGTCGTGCAGAGATTATCGAACGGGTGAATGTGGCGTGTACG
CAGGAAAAACGGCAGGCTTATTGGGTTTGCACTCTGATTGATGAATCGGAAATGTTGGAGGCGCAGGCGGCGGAAGCGGT
GGCGGAAGATCTCCGTAAAATTCTACCGCACTTACGCATCGGCTTGGTACACGGGCGAATGAAACCGAATGAAAAACAAG
CGGTAATGGCGCAGTTTAAGCTTGCCGAATTAGATTTACTGGTCGCTACGACCGTGATTGAAGTGGGCGTGGATGTGCCG
AATGCCAGTTTGATGATTATTGAAAACGCTGAGCGCCTTGGCTTGTCCCAGCTTCACCAGTTACGTGGGCGGGTCGGGCG
TGGCAGTACAGCTTCGTTTTGTGTGTTAATTTACAAACCGCCGCTCGGTAAAATTTCGCAAAAACGCTTACAAGTCATGC
GCGACACGCAGGATGGTTTCGTGATTTCGGAAAAAGATCTGGAAATTCGTGGTCCGGGGGAAGTGCTTGGCACGAAACAA
ACAGGAATTACCGAATTTAAAGTGGCGAACCTCATGCGCGATCGCAAAATGCTGCCGACAGTGCAGTTTTATGCAAAACA
ACTAGTACAGAAATATCCGCAAACGGCGGACTTGTTGATTCGCCGCTGGCTAAATAATCGTGAGATTTATAGCAATGCCT
GA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(14-171)

DEAD/DEAH box helicase (DEAD)

(293-431)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-675)

Helicase conserved C-terminal domain (Helicase_C)

(479-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.405

96.97

0.479
  recG Bacillus subtilis subsp. subtilis str. 168

40.795

97.98

0.4
  recG/mmsA Streptococcus pneumoniae R6

39.699

95.96

0.381
  recG/mmsA Streptococcus pneumoniae R36A

39.699

95.96

0.381