Detailed information    

insolico Bioinformatically predicted

Overview


Name   kpsS   Type   Regulator
Locus tag   RC22_RS06610 Genome accession   NZ_CP010464
Coordinates   1270369..1271553 (-) Length   394 a.a.
NCBI ID   WP_002932552.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC094     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1265369..1276553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC22_RS06585 (RC22_06580) fliL 1266516..1267052 (+) 537 WP_002868488.1 flagellar basal body-associated protein FliL -
  RC22_RS06590 (RC22_06585) acpS 1267053..1267400 (+) 348 WP_002825806.1 holo-ACP synthase -
  RC22_RS06595 (RC22_06590) - 1267401..1267820 (-) 420 WP_002862076.1 hypothetical protein -
  RC22_RS06600 (RC22_06595) - 1267817..1269178 (-) 1362 WP_002932555.1 cytochrome P450 -
  RC22_RS06605 (RC22_06600) - 1269175..1270296 (-) 1122 WP_002932553.1 hypothetical protein -
  RC22_RS06610 (RC22_06605) kpsS 1270369..1271553 (-) 1185 WP_002932552.1 capsule polysaccharide modification protein KpsS Regulator
  RC22_RS06615 (RC22_06610) kpsC 1271550..1273619 (-) 2070 WP_002932550.1 capsular polysaccharide biosynthesis protein -
  RC22_RS06620 (RC22_06615) cysC 1273616..1274128 (-) 513 WP_002932548.1 cytidine diphosphoramidate kinase -
  RC22_RS06625 (RC22_06620) - 1274331..1275089 (-) 759 Protein_1300 sugar phosphate nucleotidyltransferase -
  RC22_RS06630 (RC22_06625) - 1275091..1275693 (-) 603 WP_002931920.1 gamma-glutamyl-CDP-amidate hydrolase -

Sequence


Protein


Download         Length: 394 a.a.        Molecular weight: 46828.53 Da        Isoelectric Point: 9.9031

>NTDB_id=137629 RC22_RS06610 WP_002932552.1 1270369..1271553(-) (kpsS) [Campylobacter jejuni strain CJ677CC094]
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAMKMKKNQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKI
DAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYH
YKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=137629 RC22_RS06610 WP_002932552.1 1270369..1271553(-) (kpsS) [Campylobacter jejuni strain CJ677CC094]
ATGAGATTTAGCACTAAAATTAAAAAAGAATTTAGCGGTAAAAATGTTTTACTCTTGCAAGGGCCTGTGGGAAATTTTTT
TCATCATCTTGCAATGAAAATGAAAAAAAACCAAACCAAAGTTTTTAAACTCAATTTTAACGGTGGAGATTTTTTTTTCT
ATCCTAGTGGGACTAGGTGTAAGTGCGATGAAAAAGATCTTGAAAATTTCTATAGAGATTTTTTTCAAAGCAAAAAAATC
GATGCTATTTTAATGTATAACGATTGTCGCATTATACATGCCAAGGCTATTAAAGTGGCTAAAGAATTAGGAATTGAAAT
ATGGATTTTTGAGGAAGGATATTTAAGGCCTTATTGTATTACTTTGGAAAAAGATGGAGTGAATGCAAATTCTTCCTTAC
CGCGTGATAAAAATTTTTATCTTTCTCAAAATATTTTTACCAAAGAAAGCATAAAAGAAATTCCAGGTGGATTTAAATTT
ATGGCTTTTGATGCTTTTTTGTATTGGTTGTTTGCTTTTATTTTGGCTCCATTTTTTAATAACAAACTTCATCATCGCAC
TTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCATTGTATAGAAAGTATCTTTATAAGATTACAGAAAAAAAACTAA
ATGAAAAGATTTATAATTTAGAAAAAAAGTACTTTTTGGCGATTTTACAAGTTTATAGCGATACGCAAATTAAATATCAT
TACAAAAAAAGCATAGAGCACTTTATAGAGGAAACCATACTTTCTTTTGCAAATCATGCAAGAGCTAAATCTTATCTAGT
TTTTAAACACCATCCCATGGATAGGGGCTATAAGAATTATTCTAAACTCATAAACGATTTAAGTCAAAAATATCATGTAG
AAGGAAGGGTTTTATATGTTCATGATACCCACTTGCCAGTTCTTTTAAGAAAGGCTTTAGGTTGTATTACTATAAATTCA
ACAGTAGGCCTTAGTGCTATTTTAGAAGGCTGTCCGACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCTTGTC
TTATCCAAAGAAACTTCAATTTTTTTGGCGTGAAGCTCATGCTTATAAACCCAATCCTGTTTTGGTGTGTAATTTTAAGA
AATATCTTTTACAAACTAACCAATTCAACGGCAATTTTTATAAAAATTTCTTTTTAGACAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.477

100

0.985


Multiple sequence alignment