Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   RB98_RS06900 Genome accession   NZ_CP010461
Coordinates   1323893..1324204 (-) Length   103 a.a.
NCBI ID   WP_002932309.1    Uniprot ID   A0A5T1CZI8
Organism   Campylobacter jejuni strain CJ677CC013     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1318893..1329204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RB98_RS06880 (RB98_06865) ctsE 1319764..1321323 (-) 1560 WP_059117876.1 GspE/PulE family protein Machinery gene
  RB98_RS06885 (RB98_06870) ctsX 1321313..1321900 (-) 588 WP_002932306.1 hypothetical protein Machinery gene
  RB98_RS06890 (RB98_06875) ctsP 1321904..1322510 (-) 607 Protein_1359 ATP-binding protein -
  RB98_RS06895 (RB98_06880) mshL 1322503..1323915 (-) 1413 Protein_1360 pilus (MSHA type) biogenesis protein MshL -
  RB98_RS06900 (RB98_06885) ctsR 1323893..1324204 (-) 312 WP_002932309.1 hypothetical protein Machinery gene
  RB98_RS06905 (RB98_06890) nifJ 1324228..1327788 (-) 3561 WP_002932311.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  RB98_RS06910 (RB98_06895) - 1327881..1328522 (-) 642 WP_059117878.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12431.31 Da        Isoelectric Point: 6.4656

>NTDB_id=137553 RB98_RS06900 WP_002932309.1 1323893..1324204(-) (ctsR) [Campylobacter jejuni strain CJ677CC013]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIILDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=137553 RB98_RS06900 WP_002932309.1 1323893..1324204(-) (ctsR) [Campylobacter jejuni strain CJ677CC013]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATACTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1CZI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

98.058

100

0.981

Multiple sequence alignment