Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   RB98_RS06880 Genome accession   NZ_CP010461
Coordinates   1319764..1321323 (-) Length   519 a.a.
NCBI ID   WP_059117876.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC013     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1314764..1326323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RB98_RS06855 (RB98_06840) - 1314774..1315208 (+) 435 WP_002779263.1 flagellar protein FlgN -
  RB98_RS06860 (RB98_06845) flgK 1315218..1317044 (+) 1827 WP_002932296.1 flagellar hook-associated protein FlgK -
  RB98_RS06865 (RB98_06850) - 1317061..1317825 (+) 765 WP_002932297.1 TIGR02757 family protein -
  RB98_RS06870 (RB98_06855) - 1317828..1318592 (+) 765 WP_002932298.1 TSUP family transporter -
  RB98_RS06875 (RB98_06860) ctsF 1318589..1319767 (-) 1179 WP_002932300.1 type II secretion system F family protein Machinery gene
  RB98_RS06880 (RB98_06865) ctsE 1319764..1321323 (-) 1560 WP_059117876.1 GspE/PulE family protein Machinery gene
  RB98_RS06885 (RB98_06870) ctsX 1321313..1321900 (-) 588 WP_002932306.1 hypothetical protein Machinery gene
  RB98_RS06890 (RB98_06875) ctsP 1321904..1322510 (-) 607 Protein_1359 ATP-binding protein -
  RB98_RS06895 (RB98_06880) mshL 1322503..1323915 (-) 1413 Protein_1360 pilus (MSHA type) biogenesis protein MshL -
  RB98_RS06900 (RB98_06885) ctsR 1323893..1324204 (-) 312 WP_002932309.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 60091.88 Da        Isoelectric Point: 5.7035

>NTDB_id=137551 RB98_RS06880 WP_059117876.1 1319764..1321323(-) (ctsE) [Campylobacter jejuni strain CJ677CC013]
MESRMDKIFQAYIDNEISLDEICAKFNITSWDFFKKLANFCNLHFVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMI
IRSKPCSLELLEQVKTFMICEKIDTAIADELKITKILNQIRIQEEIKRLSIKLRLEWQENQKRDDQSCISQIFDFLLHEI
LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDVYEALVFHVKFLACLNLAESRKTQDGSFELDFENERYDFRVSCL
PLIYGESVVIRILKHNKEILDLYKLNLGDKNLEILKKILHRPNGVILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDP
IEYKIPLVQQILLNSKVGVEFNSILRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALSTIDRLLDMQ
AKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERCHHSGFFGRELIAECLEINEDLACAIRENQD
KTILMELAKKYGFQTMFEQGLKKAKEGLTSIDELLRVVR

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=137551 RB98_RS06880 WP_059117876.1 1319764..1321323(-) (ctsE) [Campylobacter jejuni strain CJ677CC013]
ATGGAAAGTAGAATGGATAAAATTTTTCAAGCTTATATTGATAATGAAATAAGTCTTGATGAAATTTGCGCTAAATTTAA
TATCACTTCTTGGGATTTTTTTAAAAAATTAGCAAATTTTTGTAATTTACATTTTGTTGATTTAGATGAAGATAATGATT
TTATTTATGAAGGTATACCTTTTTCTTTACTTTTAAAATTTAAATTTCTGCTTATTAAAAACAATGACGGCTTTATGATT
ATTAGATCTAAACCTTGTTCTTTAGAGCTTTTAGAGCAAGTTAAGACTTTTATGATTTGTGAAAAAATCGACACTGCAAT
TGCCGATGAATTAAAGATAACTAAAATTTTAAATCAAATTCGCATTCAAGAGGAGATTAAAAGATTAAGTATTAAGCTTA
GACTTGAATGGCAAGAAAATCAAAAAAGAGATGATCAAAGTTGCATCAGTCAAATTTTTGATTTTTTATTACATGAAATT
TTATCTTTTCATGCGAGTGATATTCATATAGAAGCAAGGAATGATGACGCTTTGATTAGGTTTAGGGTTGATGGAATTTT
GCGTGAATTTGCTATTTTTGAGAAGGATGTTTATGAAGCTTTGGTTTTTCATGTCAAATTTTTAGCTTGTTTGAATTTAG
CTGAATCAAGAAAAACACAAGATGGAAGTTTTGAATTAGATTTTGAAAATGAAAGATATGATTTTCGTGTTTCATGTTTG
CCTTTGATTTATGGCGAAAGTGTTGTTATAAGAATTTTAAAACATAATAAAGAAATTTTGGATTTGTATAAACTAAATCT
TGGAGATAAAAATTTAGAAATTTTAAAAAAGATTTTACATCGTCCCAATGGAGTGATTTTATTAACCGGCCCTACTGGTA
GTGGTAAAAGTACAACTTTATACGCGTGTTTAAATGAGTTGAAAAGTATTGAAAAAAAGATTATTTCAGCAGAAGATCCT
ATAGAATATAAAATTCCTTTAGTGCAGCAAATTTTGCTTAATTCAAAAGTTGGAGTCGAGTTTAATAGTATTTTAAGAGC
AATTTTAAGGCAAGATCCTGATATTATCATGATAGGAGAAATTCGCGATGAAGAAAGTTTAGATATTGCACTTAAAGCCT
CTTTAACAGGTCATTTGCTTTTAAGCACCTTGCATACTAATGATGCTCTTAGTACCATTGATAGGCTTTTGGATATGCAA
GCAAAAAGTTACTTGATAGCATCGGCTTTGAGTCTTGTTATAGCACAGCGTTTGGTTAGAAAACTTTGTCCTTGGTGCAA
ACAAAAAAGTAAAAAACATTATATTGAATTTGAAGGTGAATTTTTTGAACCAAAAGGATGTGAGCGTTGTCATCATAGTG
GATTTTTTGGCAGAGAATTAATCGCTGAATGCTTAGAGATCAATGAAGATTTAGCTTGTGCAATTAGGGAAAATCAAGAT
AAAACGATTTTAATGGAGCTTGCAAAAAAATATGGCTTTCAAACTATGTTTGAACAAGGTTTAAAAAAAGCCAAAGAAGG
TCTTACAAGTATAGATGAGCTTTTAAGGGTTGTAAGATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(157-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

98.459

100

0.985

Multiple sequence alignment