Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   APQ97_RS04775 Genome accession   NZ_CP012911
Coordinates   975390..976088 (+) Length   232 a.a.
NCBI ID   WP_002935052.1    Uniprot ID   -
Organism   Streptococcus suis strain NSUI060     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 970390..981088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ97_RS04740 (APQ97_04730) - 970677..970901 (-) 225 WP_002935042.1 helix-turn-helix transcriptional regulator -
  APQ97_RS04745 (APQ97_04735) - 971067..971801 (-) 735 WP_002935043.1 ABC transporter permease -
  APQ97_RS04750 (APQ97_04740) - 971785..972549 (-) 765 WP_002935044.1 ABC transporter permease -
  APQ97_RS04755 (APQ97_04745) - 972551..973459 (-) 909 WP_002935046.1 ABC transporter ATP-binding protein -
  APQ97_RS04760 (APQ97_04750) - 973569..974627 (-) 1059 Protein_906 ATP-binding cassette domain-containing protein -
  APQ97_RS04765 (APQ97_04755) - 974696..974851 (-) 156 WP_002935048.1 lacticin 481 family lantibiotic -
  APQ97_RS04770 (APQ97_04760) - 974880..975035 (-) 156 WP_002935049.1 lacticin 481 family lantibiotic -
  APQ97_RS04775 (APQ97_04765) scnR 975390..976088 (+) 699 WP_002935052.1 response regulator transcription factor Regulator
  APQ97_RS04780 (APQ97_04770) - 976104..977459 (+) 1356 WP_002935054.1 HAMP domain-containing sensor histidine kinase -
  APQ97_RS04785 (APQ97_04775) - 977582..979441 (-) 1860 WP_002935056.1 SAG1250 family conjugative relaxase -
  APQ97_RS04790 (APQ97_04780) - 979428..979793 (-) 366 WP_002935058.1 plasmid mobilization relaxosome protein MobC -
  APQ97_RS04795 (APQ97_04785) - 979803..980162 (-) 360 WP_002935059.1 SAG1252 family conjugative relaxosome accessory protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26300.45 Da        Isoelectric Point: 5.1495

>NTDB_id=137394 APQ97_RS04775 WP_002935052.1 975390..976088(+) (scnR) [Streptococcus suis strain NSUI060]
MGFEIQLLNKHILIVDDDIALSESIKEVLMSRGFKNISFAYSISEGIDIFSVSQIDLIILDVMLPDGEGYLLSKYVRKTS
DVPILFLTAKNNPDDEINGLDSGGDDYVTKPFLPKSLTYRIMALLRRAYRDESELIELTDCTIDLNNASVKKSNQNFSLT
PTEIQILRKLFTNKNYIVSTETICDTIWGLDSFGYEKSLMVHIRNIREKIEIIPSKPKHLITVKGLGYKLAI

Nucleotide


Download         Length: 699 bp        

>NTDB_id=137394 APQ97_RS04775 WP_002935052.1 975390..976088(+) (scnR) [Streptococcus suis strain NSUI060]
ATGGGTTTTGAAATACAATTGTTGAATAAACATATACTAATTGTGGATGATGACATCGCATTAAGCGAATCAATCAAAGA
AGTGCTCATGAGTCGTGGCTTCAAAAATATTAGTTTTGCTTATAGTATTAGCGAAGGTATTGATATTTTTTCAGTATCTC
AAATTGATTTAATTATTCTAGATGTCATGTTACCAGATGGTGAAGGCTATTTACTTTCCAAATATGTAAGAAAGACATCT
GATGTCCCAATTCTATTCTTAACTGCTAAAAATAATCCTGATGATGAAATAAATGGGCTTGACTCAGGAGGAGATGACTA
TGTTACAAAGCCATTTTTACCTAAATCTTTAACTTACCGTATAATGGCATTGTTGAGAAGAGCTTACCGAGATGAATCTG
AACTCATTGAATTAACAGATTGCACAATTGACTTGAATAATGCAAGCGTAAAAAAAAGTAATCAAAATTTTTCACTGACC
CCTACTGAAATTCAAATTCTTAGAAAGCTATTTACCAACAAAAATTACATCGTTTCCACAGAGACAATATGTGATACTAT
TTGGGGATTAGATAGCTTTGGATATGAAAAATCCTTAATGGTCCATATACGCAATATTCGAGAAAAAATCGAAATTATAC
CTTCCAAGCCAAAGCATCTAATTACCGTTAAAGGGCTTGGATATAAACTTGCTATTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)

Response regulator receiver domain (Response_reg)

(12-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

42.152

96.121

0.405
  vicR Streptococcus mutans UA159

38.428

98.707

0.379
  micA Streptococcus pneumoniae Cp1015

37.719

98.276

0.371

Multiple sequence alignment