Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   PGF_RS07780 Genome accession   NZ_CP012889
Coordinates   1827735..1829831 (-) Length   698 a.a.
NCBI ID   WP_012458407.1    Uniprot ID   B2RL87
Organism   Porphyromonas gingivalis 381     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1822735..1834831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGF_RS11740 - 1823152..1823244 (-) 93 WP_230493959.1 DUF1661 domain-containing protein -
  PGF_RS10705 - 1823213..1823341 (+) 129 WP_230491671.1 DUF1661 domain-containing protein -
  PGF_RS07765 (PGF_00015970) - 1823406..1824914 (-) 1509 WP_230847015.1 sialidase family protein -
  PGF_RS07770 (PGF_00015980) - 1825413..1826870 (+) 1458 WP_012458405.1 leucine-rich repeat domain-containing protein -
  PGF_RS07775 (PGF_00015990) - 1826965..1827735 (-) 771 WP_039417386.1 HAD family hydrolase -
  PGF_RS07780 (PGF_00016000) recG/mmsA 1827735..1829831 (-) 2097 WP_012458407.1 ATP-dependent DNA helicase RecG Machinery gene
  PGF_RS07785 (PGF_00016010) galE 1829874..1830902 (-) 1029 WP_012458408.1 UDP-glucose 4-epimerase GalE -
  PGF_RS07790 (PGF_00016020) yihA 1830912..1831517 (-) 606 WP_005873828.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  PGF_RS07795 (PGF_00016030) - 1831618..1832211 (+) 594 WP_004584828.1 hypothetical protein -
  PGF_RS07800 (PGF_00016040) - 1832214..1833683 (+) 1470 WP_012458409.1 purple acid phosphatase family protein -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 78935.00 Da        Isoelectric Point: 8.4175

>NTDB_id=137199 PGF_RS07780 WP_012458407.1 1827735..1829831(-) (recG/mmsA) [Porphyromonas gingivalis 381]
MDILSTKITYLTGVGPKRAEVLKEEIEVRTYLDLLHYFPFRYVDRSRFYAIREIRSDMPYIQLRGVLRNFSEVGEGRRKR
LTATFSDGTGSIELVWFKGIKYIRDKLQEGRRYIVFGKPVFFASGYNIAHPEIDAEEKAEQVAGGLTPIYHTTERMKSMG
LGSKQLQQLLYVLLNQVSATLTETLPPYILSSYGFVSYQEAIRQIHFPQGVAQLEAARTRLKFEELFYVQLHLIGSKLER
KARFQGIVFAQVGALFNTFYKEHLPFELTGAQKKVVREIRQDTLSGHQMNRLVQGDVGSGKTLVALLSMLLALDNGCQAC
LMAPTEILARQHHHTLSELLRPLGIEVGLLIGSCTARQRERLLPRLADGSLSIVVGTHALLEQGVAFHRLGMAVIDEQHR
FGVQQRARLWEKNLDTLPHILIMSATPIPRTLAMTLYGDLDISIIDELPPGRKPIQTLHHFDNDMAPVFRFLRSQLAAGR
QVYVVYPMIEGSETTDLKNLEDGFELFSSIFPDEGVTMVHGKMKAKEKEARMADFVSGRSRILLATTVIEVGVNVPNATV
MVVENADRFGLSQLHQLRGRVGRGGEQSYCILITGTKTGEDSRRRIQVMVETNDGFEIAEEDMRLRGFGDLEGTRQSGRQ
ISLRIANPARDTELIALSRSIAEQLLERDPELRHPDNQMLALRLNKLFPKEEDWSVIS

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=137199 PGF_RS07780 WP_012458407.1 1827735..1829831(-) (recG/mmsA) [Porphyromonas gingivalis 381]
ATGGATATCCTATCGACCAAAATCACTTACCTGACCGGCGTAGGGCCGAAGCGGGCGGAAGTACTGAAGGAGGAAATAGA
AGTACGTACCTATCTGGATCTTCTCCATTATTTCCCCTTTCGCTATGTCGATAGGAGTCGATTTTATGCCATACGGGAGA
TACGCTCCGATATGCCCTATATCCAACTGCGCGGTGTCCTTCGCAACTTCTCCGAGGTGGGCGAAGGACGGCGCAAGCGG
CTGACGGCTACTTTCTCGGACGGTACGGGAAGCATAGAGCTGGTTTGGTTCAAGGGTATCAAGTACATACGCGACAAACT
GCAGGAAGGACGGCGATATATCGTTTTCGGCAAGCCTGTTTTCTTCGCTTCCGGCTATAACATAGCACATCCCGAAATAG
ATGCGGAGGAGAAGGCAGAGCAGGTAGCCGGCGGACTGACTCCGATTTATCACACCACAGAGCGCATGAAGAGTATGGGG
CTGGGCAGCAAACAGCTCCAGCAACTCCTGTACGTACTCCTCAATCAGGTATCAGCCACACTGACCGAGACATTGCCGCC
TTACATCCTTTCGTCTTATGGGTTCGTCTCCTATCAGGAAGCCATCAGACAGATTCATTTCCCTCAGGGGGTGGCACAGC
TGGAAGCTGCCCGTACAAGACTCAAGTTCGAAGAGCTGTTCTATGTGCAGCTGCATCTGATCGGCAGCAAGCTGGAGCGT
AAAGCGCGTTTTCAGGGAATTGTTTTTGCTCAAGTGGGAGCCTTGTTCAATACATTCTACAAGGAACATCTGCCTTTCGA
ACTGACCGGTGCGCAGAAAAAGGTGGTACGGGAGATCCGGCAGGATACCCTCAGCGGACATCAAATGAACCGACTAGTGC
AGGGCGATGTGGGTAGCGGTAAAACTTTGGTAGCCTTGCTGTCCATGCTGTTGGCTCTGGACAATGGCTGTCAGGCTTGC
CTGATGGCTCCGACCGAAATTCTCGCCAGACAGCATCATCATACCCTGTCCGAACTGTTGCGACCGCTTGGCATAGAAGT
CGGTTTGCTCATCGGAAGCTGTACCGCACGTCAGCGGGAACGCTTGCTTCCGCGTCTGGCCGATGGCTCGCTCTCCATCG
TCGTCGGTACGCATGCCCTATTGGAACAGGGAGTGGCCTTTCATCGTTTGGGAATGGCTGTCATAGACGAGCAGCACCGA
TTCGGCGTACAGCAGCGAGCCCGCTTGTGGGAAAAGAACCTCGACACTCTGCCCCATATTCTGATTATGAGTGCCACCCC
CATACCTCGTACATTGGCCATGACGTTATACGGCGATCTGGATATTTCCATCATTGACGAATTGCCTCCCGGCCGTAAGC
CCATACAGACGCTCCACCACTTCGACAACGATATGGCTCCTGTCTTTCGTTTCCTGCGATCTCAGCTTGCCGCAGGCCGG
CAGGTATATGTGGTGTATCCGATGATCGAGGGGTCGGAGACGACCGATCTGAAGAATCTTGAAGATGGCTTCGAGCTGTT
CTCTTCCATTTTCCCCGATGAGGGCGTGACGATGGTGCACGGCAAGATGAAAGCCAAGGAAAAGGAGGCACGTATGGCGG
ACTTCGTCAGCGGTCGCTCCCGTATCTTGTTGGCTACGACGGTTATCGAAGTCGGAGTGAATGTCCCCAATGCTACGGTG
ATGGTAGTGGAGAATGCCGATCGTTTCGGCCTGTCGCAGCTACACCAGCTTAGAGGACGTGTAGGCCGCGGAGGAGAGCA
AAGCTATTGCATCCTGATCACGGGAACGAAAACAGGAGAGGATTCGCGTCGGCGTATTCAGGTGATGGTGGAGACGAACG
ATGGATTCGAAATAGCAGAGGAAGATATGCGCCTTCGTGGTTTCGGCGACTTGGAGGGTACGCGCCAGAGCGGTCGTCAG
ATCAGCCTTCGGATAGCCAATCCCGCACGAGATACGGAGCTGATAGCTCTTTCCCGAAGTATAGCGGAGCAACTACTGGA
GCGCGACCCCGAACTTCGCCATCCCGACAATCAAATGCTGGCCCTTCGTCTGAACAAACTTTTCCCCAAGGAGGAAGACT
GGAGTGTCATAAGCTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(272-431)

Helicase conserved C-terminal domain (Helicase_C)

(477-585)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(612-698)

RecG wedge domain (RecG_wedge)

(8-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2RL87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

40.969

97.564

0.4
  recG/mmsA Streptococcus pneumoniae R36A

40.969

97.564

0.4
  recG Neisseria meningitidis strain C311

42.033

94.413

0.397
  recG Bacillus subtilis subsp. subtilis str. 168

38.563

97.708

0.377