Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   AOT11_RS11875 Genome accession   NZ_CP012881
Coordinates   2554593..2556767 (+) Length   724 a.a.
NCBI ID   WP_418387138.1    Uniprot ID   -
Organism   Vibrio vulnificus NBRC 15645 = ATCC 27562     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2549593..2561767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOT11_RS11850 (AOT11_18875) - 2549832..2550401 (-) 570 WP_026050610.1 hypothetical protein -
  AOT11_RS11855 (AOT11_18880) lolC 2550667..2551872 (+) 1206 WP_017422026.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  AOT11_RS11860 (AOT11_18885) lolD 2551865..2552548 (+) 684 WP_017422025.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  AOT11_RS11865 (AOT11_18890) lolE 2552559..2553803 (+) 1245 WP_017422024.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  AOT11_RS11870 (AOT11_18895) - 2554000..2554509 (-) 510 WP_026050611.1 DUF2062 domain-containing protein -
  AOT11_RS11875 (AOT11_18900) comEC 2554593..2556767 (+) 2175 WP_418387138.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AOT11_RS11880 (AOT11_18905) msbA 2556800..2558551 (+) 1752 WP_026050613.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  AOT11_RS11885 (AOT11_18910) lpxK 2558551..2559558 (+) 1008 WP_017422020.1 tetraacyldisaccharide 4'-kinase -
  AOT11_RS11890 (AOT11_18915) - 2559539..2559718 (+) 180 WP_011079973.1 Trm112 family protein -
  AOT11_RS11895 (AOT11_18920) kdsB 2559718..2560473 (+) 756 WP_017422019.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AOT11_RS11900 (AOT11_18925) - 2560644..2561432 (+) 789 WP_017422018.1 sensor domain-containing diguanylate cyclase -

Sequence

Protein


Download         Length: 724 a.a.        Molecular weight: 81546.15 Da        Isoelectric Point: 8.1847

>NTDB_id=137168 AOT11_RS11875 WP_418387138.1 2554593..2556767(+) (comEC) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
MPSWPWLMLIVVAIFIIIVRKTCRYLLGMTIALLIAISAGNLMQWQVKTLFQAGENITINGAVDSPFKQISHGYEGVVSI
TAINNSYLMWPLRPKVRLISPIPLGQGDQIVAHVTLKRVYGLLNEAGFDAERFAVSQGIVGRATIDDSRSWRFLSVSGGR
QALIEKAQQLLVNSNHTGYLLGLSFGIRDDITDEQWQQLKQSGLIHLLSISGLHIGMAFGIGYWLGHWLRFGRLTLVWLP
LAIGLSLSWSYAWLAGFTLPTQRAIVFVTLVALFSFTSRQVGRWTVLLLALAFCLAMSPFSALSASLWLSFFAVSCVFLV
VDLHESSSTWIGKMKSVFCIQGMLLLYLAPVTAYFFSGLSLAAWLYNFLFIPWFSLVVVPVIFVALVLTALDMMPVASML
WQLADFSLWPLTFAMPYAHLGWWGLSSFQVLLVALCALAVMLRHVIRWQFSAVLIILLSTSSLLNQPFSRTRIDILDVGH
GLAVLIEKDGKTLLYDTGKSWHGGSIAQQVIEPILLSRGSRSLDGVIISHQDDDHAGGLPYLQQNMRPQWVRSSHYLSDF
PCIKGQDFEWQGLKMTVLWPPKQVTRAYNPHSCVIRMEDEENQLSFLMTGDIDALAEWILIREPEQLNSDVVLVPHHGSQ
TSSIEPFVNAVQADAAIASLAKGNQWGMPQPQVVETYRRHRTQWFDTGELGQITLYVEQRRWQIVSRRDTFNAWYRQMLR
NQVE

Nucleotide


Download         Length: 2175 bp        

>NTDB_id=137168 AOT11_RS11875 WP_418387138.1 2554593..2556767(+) (comEC) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
ATGCCTTCCTGGCCTTGGTTAATGCTAATTGTTGTTGCCATCTTTATCATTATTGTGCGTAAAACGTGTCGTTACTTGCT
GGGGATGACCATCGCACTTTTGATTGCCATTTCGGCTGGTAACCTTATGCAATGGCAAGTAAAGACCCTATTTCAGGCAG
GGGAGAATATTACCATAAATGGCGCCGTTGACAGCCCTTTTAAGCAAATAAGTCACGGTTATGAAGGTGTTGTTAGCATC
ACAGCAATAAATAATAGTTATTTAATGTGGCCCTTGCGACCCAAAGTGCGTTTGATCTCACCCATTCCTCTTGGTCAGGG
GGATCAAATCGTAGCGCACGTTACGCTAAAACGTGTCTATGGGTTACTCAATGAAGCAGGGTTTGATGCTGAACGTTTTG
CTGTCAGTCAAGGCATCGTTGGACGTGCAACTATTGATGATTCTCGCTCTTGGCGTTTCCTCTCGGTGAGCGGAGGGCGA
CAAGCACTGATCGAAAAAGCGCAGCAGCTCCTGGTTAATAGCAATCATACCGGTTATTTGCTTGGCTTAAGCTTTGGTAT
TCGCGACGACATTACCGACGAACAATGGCAGCAACTCAAGCAAAGTGGTTTGATACATCTGCTTTCCATCTCAGGCTTGC
ACATTGGTATGGCTTTTGGCATCGGTTACTGGCTAGGGCATTGGTTGCGTTTTGGACGGCTTACTCTCGTTTGGCTGCCG
TTGGCTATTGGATTAAGTCTCAGTTGGAGCTATGCGTGGCTGGCTGGTTTTACTCTGCCAACGCAAAGAGCGATCGTCTT
TGTTACGTTAGTGGCGTTGTTCTCGTTTACGTCGAGGCAAGTGGGGCGCTGGACAGTCTTGCTGTTGGCACTGGCCTTTT
GCCTAGCGATGTCGCCATTTTCTGCTCTTTCTGCCAGTCTCTGGCTCTCTTTTTTTGCTGTCAGTTGCGTCTTTCTGGTG
GTTGATCTCCATGAATCGTCTTCCACTTGGATTGGCAAAATGAAAAGCGTATTTTGCATCCAAGGTATGCTACTGCTCTA
TCTCGCACCTGTGACAGCTTATTTCTTTTCCGGTCTGAGTTTAGCCGCCTGGCTGTACAACTTTCTGTTTATCCCTTGGT
TTAGCTTGGTGGTGGTGCCTGTCATATTTGTTGCACTCGTGCTGACGGCACTGGATATGATGCCTGTGGCCAGCATGCTA
TGGCAGTTGGCGGATTTTAGTTTATGGCCATTAACTTTCGCGATGCCTTACGCCCATTTAGGTTGGTGGGGGCTGTCTTC
TTTTCAGGTGTTGTTGGTCGCGTTGTGCGCGCTCGCAGTGATGCTTCGACATGTTATTCGCTGGCAATTCTCTGCCGTTC
TGATCATTTTGCTCAGCACTTCTTCACTCTTGAACCAGCCTTTTTCTCGCACCCGAATTGACATTTTGGATGTTGGCCAT
GGGCTCGCCGTATTGATTGAGAAAGACGGTAAAACACTGCTTTATGACACCGGAAAGTCTTGGCATGGCGGCAGTATTGC
GCAGCAAGTGATCGAGCCTATTTTATTGAGTCGGGGTAGTAGAAGCCTGGATGGGGTGATCATCAGTCATCAAGATGACG
ATCATGCAGGTGGCTTGCCCTATTTGCAGCAAAACATGCGCCCACAGTGGGTAAGGAGTAGTCATTACTTGAGTGACTTT
CCTTGTATTAAAGGTCAGGACTTTGAGTGGCAAGGGCTTAAAATGACCGTGCTTTGGCCACCAAAGCAAGTGACTCGTGC
CTACAACCCACACTCCTGTGTCATTCGTATGGAGGATGAGGAAAATCAGTTGTCATTTTTGATGACTGGCGATATTGACG
CTTTGGCTGAGTGGATCCTGATTCGTGAACCTGAACAGTTAAACAGCGATGTGGTATTGGTGCCGCATCATGGCAGTCAA
ACTTCGTCGATTGAGCCTTTTGTGAACGCGGTCCAAGCAGACGCGGCAATCGCTTCGTTGGCAAAAGGAAATCAGTGGGG
GATGCCACAACCACAAGTGGTCGAGACTTATCGACGACATCGTACGCAGTGGTTTGATACCGGTGAGCTGGGCCAGATAA
CTTTGTATGTGGAACAGAGACGCTGGCAAATCGTCTCAAGACGCGACACTTTCAACGCTTGGTATAGGCAGATGCTGCGT
AACCAAGTAGAATAG

Domains

Predicted by InterProScan.

Domain of unknown function (DUF4131) (DUF4131)

(4-148)

Competence protein (Competence)

(183-443)

Metallo-beta-lactamase superfamily (Lactamase_B)

(478-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

45.144

100

0.456
  comEC Vibrio campbellii strain DS40M4

44.87

100

0.453
  comEC Vibrio cholerae strain A1552

42.503

100

0.427

Multiple sequence alignment