Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SB24_RS16790 Genome accession   NZ_CP010406
Coordinates   3482209..3482823 (+) Length   204 a.a.
NCBI ID   WP_015240245.1    Uniprot ID   -
Organism   Bacillus sp. Pc3     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3477209..3487823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB24_RS16755 (SB24_16755) aroE 3477896..3478738 (+) 843 WP_039254404.1 shikimate dehydrogenase -
  SB24_RS16760 (SB24_16760) yhbY 3478732..3479022 (+) 291 WP_007408257.1 ribosome assembly RNA-binding protein YhbY -
  SB24_RS16765 (SB24_16765) - 3479033..3479602 (+) 570 WP_007408258.1 nicotinate-nucleotide adenylyltransferase -
  SB24_RS16770 (SB24_16770) yqeK 3479592..3480152 (+) 561 WP_014418422.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SB24_RS16775 (SB24_16775) rsfS 3480170..3480526 (+) 357 WP_007408260.1 ribosome silencing factor -
  SB24_RS16780 (SB24_16780) - 3480523..3481260 (+) 738 WP_015417856.1 class I SAM-dependent methyltransferase -
  SB24_RS16785 (SB24_16785) comER 3481329..3482150 (-) 822 WP_039254409.1 late competence protein ComER -
  SB24_RS16790 (SB24_16790) comEA 3482209..3482823 (+) 615 WP_015240245.1 helix-hairpin-helix domain-containing protein Machinery gene
  SB24_RS16795 (SB24_16795) - 3482890..3483459 (+) 570 WP_003152868.1 ComE operon protein 2 -
  SB24_RS16800 (SB24_16800) comEC 3483460..3485811 (+) 2352 WP_039254415.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SB24_RS19775 (SB24_16805) - 3485830..3485964 (-) 135 WP_003152870.1 YqzM family protein -
  SB24_RS20045 - 3486005..3486156 (+) 152 Protein_3316 hypothetical protein -
  SB24_RS16810 (SB24_16810) holA 3486196..3487237 (+) 1042 Protein_3317 DNA polymerase III subunit delta -
  SB24_RS16815 (SB24_16815) rpsT 3487254..3487520 (-) 267 WP_003152876.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22209.32 Da        Isoelectric Point: 5.5211

>NTDB_id=136912 SB24_RS16790 WP_015240245.1 3482209..3482823(+) (comEA) [Bacillus sp. Pc3]
MTKAMMTERLRRNLKILGACLAAGAVFICIWLFRSEKEEPVKQQSVLGQTASASVADKKDTADDKIMIDVKGAVRNPGVY
EMKAGDRVTQAIEKAGGLKKKADELNVNLAEQLQDGTIVYIPSEGEEENRPKTAAGEKENAAVNINTASLDELQAISGVG
QKKAEAIIAYREENGRFQTAEDLMNVSGFGEKSFERIKTSITVK

Nucleotide


Download         Length: 615 bp        

>NTDB_id=136912 SB24_RS16790 WP_015240245.1 3482209..3482823(+) (comEA) [Bacillus sp. Pc3]
ATGACGAAAGCGATGATGACGGAGCGGCTGCGGCGGAACCTGAAAATTCTGGGCGCTTGTCTTGCGGCAGGGGCGGTTTT
TATCTGTATTTGGCTGTTTCGTTCTGAAAAGGAAGAGCCGGTCAAACAGCAGTCCGTGCTCGGCCAAACAGCCTCAGCAT
CCGTCGCGGACAAAAAAGACACCGCAGACGATAAGATTATGATTGATGTGAAAGGTGCGGTCCGAAATCCCGGCGTGTAT
GAAATGAAAGCGGGAGACAGGGTGACGCAAGCCATTGAAAAAGCCGGCGGCCTGAAGAAAAAGGCGGATGAATTGAATGT
TAATTTAGCAGAGCAGCTGCAGGACGGGACGATTGTTTATATTCCGAGTGAAGGCGAAGAGGAGAATCGCCCGAAAACAG
CAGCGGGTGAAAAGGAGAATGCAGCTGTCAATATCAATACGGCATCTCTGGACGAACTTCAGGCGATTTCCGGGGTGGGG
CAGAAAAAAGCGGAAGCGATTATCGCCTACCGAGAAGAAAACGGACGGTTTCAGACTGCTGAAGATTTGATGAATGTATC
AGGCTTTGGAGAAAAGTCATTTGAGCGGATAAAAACTTCCATTACGGTAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(141-202)

SLBB domain (SLBB)

(68-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

58.854

94.118

0.554
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

35.545

100

0.368
  comEA/celA/cilE Streptococcus mitis SK321

35.071

100

0.363

Multiple sequence alignment