Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   SB24_RS12395 Genome accession   NZ_CP010406
Coordinates   2589842..2590531 (+) Length   229 a.a.
NCBI ID   WP_197061611.1    Uniprot ID   -
Organism   Bacillus sp. Pc3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2584842..2595531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB24_RS12370 (SB24_12370) degS 2585126..2586289 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  SB24_RS12375 (SB24_12375) degU 2586366..2587055 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  SB24_RS12380 (SB24_12380) - 2587153..2588001 (+) 849 WP_015418336.1 DegV family protein -
  SB24_RS12385 (SB24_12385) comFA 2588109..2589494 (+) 1386 WP_039253641.1 DEAD/DEAH box helicase Machinery gene
  SB24_RS12390 (SB24_12390) - 2589552..2589836 (+) 285 WP_039253645.1 competence protein ComFB -
  SB24_RS12395 (SB24_12395) comFC 2589842..2590531 (+) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  SB24_RS12400 (SB24_12400) - 2590605..2591024 (+) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  SB24_RS12405 (SB24_12405) flgM 2591094..2591360 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  SB24_RS12410 (SB24_12410) - 2591375..2591857 (+) 483 WP_039253650.1 flagellar protein FlgN -
  SB24_RS12415 (SB24_12415) flgK 2591873..2593390 (+) 1518 WP_039253652.1 flagellar hook-associated protein FlgK -
  SB24_RS12420 (SB24_12420) flgL 2593402..2594319 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  SB24_RS12425 (SB24_12425) - 2594411..2594980 (+) 570 WP_039253655.1 DUF6470 family protein -
  SB24_RS12430 (SB24_12430) fliW 2595010..2595441 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25229.83 Da        Isoelectric Point: 8.0779

>NTDB_id=136898 SB24_RS12395 WP_197061611.1 2589842..2590531(+) (comFC) [Bacillus sp. Pc3]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=136898 SB24_RS12395 WP_197061611.1 2589842..2590531(+) (comFC) [Bacillus sp. Pc3]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCTGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment