Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   SB24_RS12375 Genome accession   NZ_CP010406
Coordinates   2586366..2587055 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. Pc3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2581366..2592055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB24_RS12355 (SB24_12355) - 2581829..2582905 (+) 1077 WP_003151382.1 MraY family glycosyltransferase -
  SB24_RS12360 (SB24_12360) - 2582995..2584251 (-) 1257 WP_039253637.1 LCP family protein -
  SB24_RS12365 (SB24_12365) - 2584256..2584903 (-) 648 WP_003151384.1 YigZ family protein -
  SB24_RS12370 (SB24_12370) degS 2585126..2586289 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  SB24_RS12375 (SB24_12375) degU 2586366..2587055 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  SB24_RS12380 (SB24_12380) - 2587153..2588001 (+) 849 WP_015418336.1 DegV family protein -
  SB24_RS12385 (SB24_12385) comFA 2588109..2589494 (+) 1386 WP_039253641.1 DEAD/DEAH box helicase Machinery gene
  SB24_RS12390 (SB24_12390) - 2589552..2589836 (+) 285 WP_039253645.1 competence protein ComFB -
  SB24_RS12395 (SB24_12395) comFC 2589842..2590531 (+) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  SB24_RS12400 (SB24_12400) - 2590605..2591024 (+) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  SB24_RS12405 (SB24_12405) flgM 2591094..2591360 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  SB24_RS12410 (SB24_12410) - 2591375..2591857 (+) 483 WP_039253650.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=136896 SB24_RS12375 WP_003219701.1 2586366..2587055(+) (degU) [Bacillus sp. Pc3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=136896 SB24_RS12375 WP_003219701.1 2586366..2587055(+) (degU) [Bacillus sp. Pc3]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment