Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   SB24_RS05620 Genome accession   NZ_CP010406
Coordinates   1234450..1235241 (-) Length   263 a.a.
NCBI ID   WP_031378903.1    Uniprot ID   -
Organism   Bacillus sp. Pc3     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 1229450..1240241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB24_RS05580 (SB24_05580) - 1229715..1230050 (-) 336 WP_007408558.1 SdpI family protein -
  SB24_RS05585 (SB24_05585) - 1230136..1230663 (-) 528 WP_015417063.1 SH3 domain-containing protein -
  SB24_RS05590 (SB24_05590) - 1230796..1231065 (-) 270 WP_003155492.1 YfhJ family protein -
  SB24_RS05595 (SB24_05595) - 1231189..1231341 (+) 153 WP_003155495.1 small, acid-soluble spore protein K -
  SB24_RS05600 (SB24_05600) - 1231488..1232399 (+) 912 WP_015417062.1 serine protease -
  SB24_RS05605 (SB24_05605) - 1232362..1232751 (+) 390 WP_015417061.1 DUF2606 family protein -
  SB24_RS05610 (SB24_05610) - 1232791..1233984 (-) 1194 WP_031378905.1 MFS transporter -
  SB24_RS05615 (SB24_05615) - 1234129..1234443 (-) 315 WP_039252290.1 YfhH family protein -
  SB24_RS05620 (SB24_05620) recX 1234450..1235241 (-) 792 WP_031378903.1 recombination regulator RecX Regulator
  SB24_RS05625 (SB24_05625) - 1235333..1236232 (+) 900 WP_039252291.1 TIGR01777 family oxidoreductase -
  SB24_RS19450 - 1236288..1236398 (+) 111 WP_003155504.1 YfhE family protein -
  SB24_RS05630 (SB24_05630) - 1236469..1236660 (+) 192 WP_003155508.1 YfhD family protein -
  SB24_RS05635 (SB24_05635) - 1236700..1237284 (-) 585 WP_015417058.1 nitroreductase -
  SB24_RS05640 (SB24_05640) - 1237361..1238245 (-) 885 WP_039252294.1 PhzF family phenazine biosynthesis isomerase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30950.16 Da        Isoelectric Point: 6.2735

>NTDB_id=136874 SB24_RS05620 WP_031378903.1 1234450..1235241(-) (recX) [Bacillus sp. Pc3]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIKQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=136874 SB24_RS05620 WP_031378903.1 1234450..1235241(-) (recX) [Bacillus sp. Pc3]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGCACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAAATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAGGACAAAAAGCTGTCCACAAAAGAGATCAAACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAACAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTTAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795

Multiple sequence alignment