Detailed information NTG0136801

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RU84_RS20465
• Genome accession: NZ_CP010397
• Coordinates: 3557799..3558659 (+)
• Length: 286 a.a.
• NCBI ID: WP_029423718.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain 6200
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3552799..3563659

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RU84_RS16750 (RU84_16750)	secG	3553404..3553733 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
RU84_RS16755 (RU84_16755)	tpiA	3553746..3554540 (-)	795	WP_029423716.1	triose-phosphate isomerase	-
RU84_RS16760 (RU84_16760)	pilB	3554831..3556543 (+)	1713	WP_001274991.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RU84_RS16765 (RU84_16765)	pilC	3556573..3557799 (+)	1227	WP_029423717.1	type II secretion system F family protein	Machinery gene
RU84_RS20465 (RU84_16770)	pilD	3557799..3558659 (+)	861	WP_029423718.1	prepilin peptidase	Machinery gene
RU84_RS16775 (RU84_16775)	coaE	3558661..3559257 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
RU84_RS16780 (RU84_16780)	-	3559254..3560168 (-)	915	WP_000075015.1	DMT family transporter	-
RU84_RS16785 (RU84_16785)	rlmB	3560204..3560953 (-)	750	WP_032049906.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
RU84_RS16790 (RU84_16790)	-	3561055..3561381 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
RU84_RS16795 (RU84_16795)	-	3561458..3562768 (-)	1311	WP_002055139.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32112.50 Da
• Isoelectric Point: 7.1041

>NTDB_id=136801 RU84_RS20465 WP_029423718.1 3557799..3558659(+) (pilD) [Acinetobacter baumannii strain 6200]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAVELLTMLCSLVVVMVFGPTIQMFFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=136801 RU84_RS20465 WP_029423718.1 3557799..3558659(+) (pilD) [Acinetobacter baumannii strain 6200]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCGTCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGTCCAACCATACAAA
TGTTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGTATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	97.902	100	0.979
pilD	Acinetobacter nosocomialis M2	97.552	100	0.976
pilD	Vibrio cholerae strain A1552	53.506	94.755	0.507
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	46.591	92.308	0.43