Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AO356_RS14470 Genome accession   NZ_CP012831
Coordinates   3287135..3287779 (-) Length   214 a.a.
NCBI ID   WP_060740379.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain FW300-N2C3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3282135..3292779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AO356_RS14450 (AO356_14430) - 3283948..3284541 (+) 594 WP_060740375.1 aminodeoxychorismate/anthranilate synthase component II -
  AO356_RS14455 (AO356_14435) trpD 3284551..3285600 (+) 1050 WP_060740376.1 anthranilate phosphoribosyltransferase -
  AO356_RS14460 (AO356_14440) trpC 3285597..3286433 (+) 837 WP_060740377.1 indole-3-glycerol phosphate synthase TrpC -
  AO356_RS14465 (AO356_14445) - 3286437..3287138 (+) 702 WP_060740378.1 lipoyl protein ligase domain-containing protein -
  AO356_RS14470 (AO356_14450) crp 3287135..3287779 (-) 645 WP_060740379.1 cAMP-activated global transcriptional regulator CRP Regulator
  AO356_RS14475 (AO356_14455) - 3288013..3288435 (+) 423 WP_003206127.1 OsmC family protein -
  AO356_RS14480 (AO356_14460) coq7 3288542..3289189 (-) 648 WP_060740380.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  AO356_RS14485 (AO356_14465) - 3289265..3289603 (-) 339 WP_060743122.1 histidine triad nucleotide-binding protein -
  AO356_RS14490 (AO356_14470) - 3289686..3290474 (-) 789 WP_060740381.1 SDR family NAD(P)-dependent oxidoreductase -
  AO356_RS14495 (AO356_14475) - 3290537..3291499 (-) 963 WP_060740382.1 DUF805 domain-containing protein -
  AO356_RS14500 (AO356_14480) - 3291552..3292520 (-) 969 WP_060740383.1 NAD(P)H-dependent flavin oxidoreductase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24346.34 Da        Isoelectric Point: 8.4882

>NTDB_id=136744 AO356_RS14470 WP_060740379.1 3287135..3287779(-) (crp) [Pseudomonas fluorescens strain FW300-N2C3]
MVAITPTFKIKNLDKLLMHCQRRRYPAKHNIICAGDRSETLFFIIKGSVTILIEDDDGREMIIAYLNSGDFFGELGLFEQ
AGKEQERSAWVRTKIECEVAEISYAKFRELSLQDPDILYVLSGQIAQRLRNTTRKVGDLAFFDVTGRVARCLLELCKQPD
AMTHPDGMQIKVTRQEIGRIVGCSREMVGRVLKDLEERNLVSVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=136744 AO356_RS14470 WP_060740379.1 3287135..3287779(-) (crp) [Pseudomonas fluorescens strain FW300-N2C3]
ATGGTTGCCATTACTCCCACGTTCAAGATCAAGAATCTCGACAAGCTCTTGATGCATTGCCAGCGCCGCCGCTACCCAGC
CAAACACAACATCATTTGTGCGGGAGATCGTTCCGAGACGCTGTTTTTCATCATCAAGGGCTCGGTCACTATCCTGATAG
AAGATGATGACGGTCGGGAAATGATCATCGCCTACCTCAATTCCGGAGATTTTTTCGGTGAGCTGGGGTTGTTCGAACAG
GCGGGCAAGGAACAGGAACGCAGTGCCTGGGTGCGGACCAAGATTGAATGTGAAGTTGCGGAAATCAGCTACGCCAAATT
CCGAGAACTGTCCCTGCAAGACCCGGACATTCTTTACGTCCTCAGCGGACAAATCGCACAGCGCCTGCGCAATACCACCC
GCAAGGTCGGCGATCTCGCATTTTTCGACGTCACTGGACGTGTCGCACGTTGTCTGTTGGAGCTGTGCAAGCAGCCCGAT
GCCATGACCCACCCGGACGGCATGCAGATCAAGGTGACCCGCCAGGAGATTGGCCGGATTGTCGGTTGCTCCCGTGAAAT
GGTCGGTCGCGTACTCAAGGACCTGGAAGAGCGCAACCTGGTCAGCGTCAAAGGCAAGACCATGGTGGTGTTCGGAACGC
GTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(22-113)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(146-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

64.532

94.86

0.612
  crp Haemophilus influenzae Rd KW20

57.426

94.393

0.542
  crp Acinetobacter baumannii D1279779

53.081

98.598

0.523

Multiple sequence alignment