Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   AO356_RS12395 Genome accession   NZ_CP012831
Coordinates   2829473..2831548 (-) Length   691 a.a.
NCBI ID   WP_060740038.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain FW300-N2C3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2824473..2836548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AO356_RS12375 (AO356_12360) - 2824505..2824888 (+) 384 WP_060740034.1 hypothetical protein -
  AO356_RS12380 (AO356_12365) - 2825031..2826395 (+) 1365 WP_060740035.1 delta-60 repeat domain-containing protein -
  AO356_RS12385 (AO356_12370) - 2826620..2827927 (+) 1308 WP_060740036.1 hypothetical protein -
  AO356_RS12390 (AO356_12375) - 2827996..2829393 (-) 1398 WP_060740037.1 aminoacyl-tRNA deacylase and HDOD domain-containing protein -
  AO356_RS12395 (AO356_12380) recG 2829473..2831548 (-) 2076 WP_060740038.1 ATP-dependent DNA helicase RecG Machinery gene
  AO356_RS12400 (AO356_12385) - 2831558..2832478 (-) 921 WP_053126577.1 hydrogen peroxide-inducible genes activator -
  AO356_RS12405 (AO356_12390) - 2832791..2833549 (-) 759 WP_060740039.1 energy transducer TonB -
  AO356_RS12410 (AO356_12395) exbD 2833546..2833974 (-) 429 WP_060740040.1 TonB system transport protein ExbD -
  AO356_RS12415 (AO356_12400) exbB 2833981..2834952 (-) 972 WP_060743107.1 tonB-system energizer ExbB -
  AO356_RS12420 (AO356_12405) - 2835140..2835997 (+) 858 WP_060740041.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 76146.68 Da        Isoelectric Point: 6.8731

>NTDB_id=136730 AO356_RS12395 WP_060740038.1 2829473..2831548(-) (recG) [Pseudomonas fluorescens strain FW300-N2C3]
MTELSKVPVTTLKGVGEAMAEKLAKVGLENLQDLLFHLPLRYQDRTRVVPIGHLRPGQDAVIEGTVSGADVVMGRRRSLV
VRLQDGTGGLSLRFYHFSNAQKEGLKRGTRVRCYGEARPGASGLEIYHPEYRSITGDEPPPVDETLTPVYPLTEGLTQQR
LRQLCQQTLTLLGPSSLPDWLPTELARDYHLAPLADAIRYLHHPPADADVDELALGHHWAQHRLAFEELLTHQLSQQRLR
ESLRSLRAPAMPKARDLPARYLANLGFTPTGAQQRVGNEIAYDLSQPEPMLRLIQGDVGAGKTVVAALAALQALEAGYQV
ALMAPTEILAEQHFITFQRWLEPLGIEVAWLAGKLKGKNRAAALAQIAEGAPMVVGTHALFQDEVQFKNLALVIIDEQHR
FGVQQRLALRQKGVGGRMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVTDTRRVEVIERVRSACAE
GRQAYWVCTLIEESEELTCQAAETTFEDLTAALGELKVGLIHGRMKPAEKAAVMAEFKAGALQLLVATTVIEVGVDVPNA
SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTG
LLQFKVADLMRDADLLPAVRDAAQALLERWPDHVSPLLDRWLRHGQQYGQV

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=136730 AO356_RS12395 WP_060740038.1 2829473..2831548(-) (recG) [Pseudomonas fluorescens strain FW300-N2C3]
ATGACTGAGCTGTCGAAGGTGCCGGTCACGACACTCAAGGGTGTCGGTGAAGCCATGGCCGAGAAACTGGCCAAGGTCGG
CCTGGAAAACCTCCAGGACCTGCTGTTCCACCTGCCGTTGCGCTATCAGGACCGCACCCGCGTGGTGCCCATCGGCCATC
TGCGCCCGGGACAGGATGCGGTGATCGAAGGCACCGTCAGCGGCGCCGACGTGGTCATGGGCCGCCGCCGCAGCCTGGTG
GTGCGCCTGCAGGACGGCACCGGCGGACTCAGCCTGCGCTTCTATCACTTCAGCAATGCGCAAAAGGAAGGCCTCAAGCG
TGGCACCCGCGTGCGCTGCTACGGTGAAGCGCGGCCCGGGGCGTCGGGACTGGAAATCTACCACCCGGAATACCGCAGCA
TTACCGGCGACGAACCGCCGCCCGTGGATGAAACCCTGACCCCGGTCTATCCGCTCACCGAAGGCCTGACCCAGCAACGC
CTGCGCCAGCTCTGCCAGCAAACCCTGACGTTGCTCGGCCCCAGCAGCCTGCCCGACTGGCTACCCACGGAACTGGCCCG
GGATTACCACTTGGCGCCGCTGGCCGACGCGATCCGCTACCTGCATCATCCGCCCGCCGACGCCGACGTGGACGAACTCG
CCCTGGGCCATCACTGGGCCCAGCATCGTCTGGCGTTCGAAGAGCTGCTGACCCATCAACTGTCCCAGCAACGCCTGCGC
GAAAGCCTGCGCTCCCTGCGCGCCCCGGCCATGCCCAAGGCCAGGGACCTGCCGGCCCGCTACCTGGCCAACCTCGGCTT
CACCCCCACAGGCGCGCAGCAACGAGTCGGCAACGAAATCGCCTACGACCTGAGCCAGCCCGAGCCAATGCTGCGGCTGA
TCCAGGGCGATGTCGGCGCCGGCAAGACCGTGGTCGCCGCCCTCGCCGCGCTGCAGGCCTTGGAGGCGGGTTATCAGGTG
GCGCTGATGGCGCCCACCGAGATCCTCGCCGAACAACACTTCATCACCTTCCAGCGCTGGCTCGAACCGCTGGGCATCGA
AGTCGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGAACCGCGCCGCCGCCCTGGCGCAGATCGCCGAGGGCGCACCGATGG
TGGTCGGCACCCATGCGCTGTTCCAGGACGAAGTGCAGTTCAAGAACCTGGCCCTGGTGATCATCGACGAACAGCACCGC
TTCGGCGTGCAACAGCGCCTGGCCCTGCGGCAGAAAGGCGTCGGCGGGCGGATGTGCCCCCATCAACTGATCATGACCGC
CACGCCGATCCCGCGGACCCTGGCGATGAGCGCCTACGCCGACCTCGACACCTCGATCCTCGACGAACTGCCTCCCGGCC
GTACGCCGGTCAATACCGTGTTGGTCACCGATACCCGACGGGTGGAAGTGATCGAGCGCGTGCGCAGCGCCTGTGCCGAG
GGCCGGCAGGCCTATTGGGTGTGTACGTTGATCGAAGAGTCGGAAGAACTGACCTGCCAGGCGGCCGAAACCACCTTCGA
GGACCTCACCGCCGCCCTCGGCGAGTTGAAAGTCGGGTTGATCCACGGTCGCATGAAGCCCGCCGAGAAAGCCGCGGTCA
TGGCTGAATTCAAGGCCGGCGCCCTGCAACTGCTGGTCGCCACCACGGTGATCGAGGTGGGCGTCGACGTGCCCAATGCC
AGCCTGATGATCATCGAAAACCCCGAGCGCCTGGGCCTGGCACAGTTGCACCAGCTGCGCGGCCGGGTGGGCCGGGGCAG
CGCCGCCAGCCATTGCGTCTTGCTCTATCACCCGCCGCTGTCGCAGATCGGCCGCCAACGGCTGGGGATCATGCGCGAAA
CCAACGACGGTTTCGTCATCGCCGAAAAAGACCTCGAATTGCGCGGCCCCGGTGAAATGCTCGGCACACGCCAGACAGGT
CTGCTTCAATTCAAGGTAGCCGACCTGATGCGCGACGCCGATCTGCTCCCCGCCGTACGCGATGCCGCCCAGGCCCTGCT
GGAACGCTGGCCCGACCACGTCAGCCCGCTGCTGGATCGCTGGCTGCGTCATGGGCAGCAATACGGCCAAGTGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(293-408)

RecG wedge domain (RecG_wedge)

(12-171)

Helicase conserved C-terminal domain (Helicase_C)

(479-586)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.74

97.829

0.496
  recG/mmsA Streptococcus pneumoniae R6

40

98.408

0.394
  recG/mmsA Streptococcus pneumoniae R36A

40

98.408

0.394
  recG Bacillus subtilis subsp. subtilis str. 168

39.673

97.395

0.386