Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RR32_RS15145 Genome accession   NZ_CP010368
Coordinates   3216074..3216484 (-) Length   136 a.a.
NCBI ID   WP_031982038.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain 6411     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3211074..3221484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RR32_RS15115 (RR32_15120) - 3211161..3211430 (-) 270 WP_016804447.1 HPr family phosphocarrier protein -
  RR32_RS15120 (RR32_15125) rapZ 3211427..3212278 (-) 852 WP_002054547.1 RNase adapter RapZ -
  RR32_RS15125 (RR32_15130) panC 3212301..3213149 (-) 849 WP_016804448.1 pantoate--beta-alanine ligase -
  RR32_RS15130 (RR32_15135) panB 3213153..3213962 (-) 810 WP_032047472.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  RR32_RS15135 (RR32_15140) folK 3214006..3214488 (-) 483 WP_006581366.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  RR32_RS15140 (RR32_15145) pcnB 3214485..3215948 (-) 1464 WP_004710567.1 polynucleotide adenylyltransferase PcnB -
  RR32_RS15145 (RR32_15150) comEA 3216074..3216484 (-) 411 WP_031982038.1 ComEA family DNA-binding protein Machinery gene
  RR32_RS15150 (RR32_15155) mazG 3216453..3217259 (-) 807 WP_032047473.1 nucleoside triphosphate pyrophosphohydrolase -
  RR32_RS15155 (RR32_15160) - 3217371..3218144 (+) 774 WP_032047474.1 SDR family oxidoreductase -
  RR32_RS15160 (RR32_15165) - 3218187..3220493 (-) 2307 WP_002054537.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15553.88 Da        Isoelectric Point: 10.4054

>NTDB_id=136624 RR32_RS15145 WP_031982038.1 3216074..3216484(-) (comEA) [Acinetobacter nosocomialis strain 6411]
MRYSMRLWKNNCFILMMLCLGVISPSVFAQSFDQNFQEWKAKQQMYDQKLNVSKSSHSYGSKISQTNSLNDSTGQIHLNQ
ATVNEFRQLKGIGEKKAQAIVEYRQKNGGFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=136624 RR32_RS15145 WP_031982038.1 3216074..3216484(-) (comEA) [Acinetobacter nosocomialis strain 6411]
ATGCGATACAGCATGAGACTTTGGAAAAATAATTGTTTTATTTTAATGATGTTGTGCTTAGGTGTGATTTCACCTTCGGT
TTTTGCTCAATCGTTTGATCAGAATTTTCAGGAATGGAAGGCTAAGCAGCAGATGTACGACCAAAAGTTAAACGTCTCTA
AGTCTTCTCATTCTTATGGTTCTAAAATTTCTCAAACGAACAGTTTAAATGATTCTACTGGGCAGATTCATTTAAATCAG
GCCACTGTAAATGAGTTTCGGCAGCTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCAATTGTGGAATACAGACAAAAGAA
TGGGGGTTTTAAAAATATTGATGAAATTAAAAACGTCAAAGGAATCGGCCCCGCTATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

87.5

100

0.875
  comEA Acinetobacter baumannii D1279779

87.5

100

0.875
  comEA Acinetobacter baylyi ADP1

48.649

81.618

0.397

Multiple sequence alignment