Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AO353_RS07200 Genome accession   NZ_CP012830
Coordinates   1579919..1580563 (+) Length   214 a.a.
NCBI ID   WP_054594293.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain FW300-N2E3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1574919..1585563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AO353_RS07170 (AO353_07170) - 1575057..1575977 (+) 921 WP_054594289.1 DUF805 domain-containing protein -
  AO353_RS07175 (AO353_07175) - 1576040..1576828 (+) 789 WP_054594290.1 SDR family NAD(P)-dependent oxidoreductase -
  AO353_RS07180 (AO353_07180) - 1576916..1577254 (+) 339 WP_007906873.1 histidine triad nucleotide-binding protein -
  AO353_RS07185 (AO353_07185) coq7 1577507..1578154 (+) 648 WP_054594291.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  AO353_RS07190 (AO353_07190) speD 1578228..1579022 (-) 795 WP_054594292.1 adenosylmethionine decarboxylase -
  AO353_RS07195 (AO353_07195) - 1579261..1579683 (-) 423 WP_017138086.1 OsmC family protein -
  AO353_RS07200 (AO353_07200) crp 1579919..1580563 (+) 645 WP_054594293.1 cAMP-activated global transcriptional regulator CRP Regulator
  AO353_RS31185 (AO353_07205) - 1580560..1581261 (-) 702 WP_054598190.1 lipoate--protein ligase family protein -
  AO353_RS07210 (AO353_07210) trpC 1581329..1582165 (-) 837 WP_054594294.1 indole-3-glycerol phosphate synthase TrpC -
  AO353_RS07215 (AO353_07215) trpD 1582162..1583211 (-) 1050 WP_054594295.1 anthranilate phosphoribosyltransferase -
  AO353_RS07220 (AO353_07220) - 1583221..1583814 (-) 594 WP_019693903.1 aminodeoxychorismate/anthranilate synthase component II -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24277.17 Da        Isoelectric Point: 8.1483

>NTDB_id=136602 AO353_RS07200 WP_054594293.1 1579919..1580563(+) (crp) [Pseudomonas fluorescens strain FW300-N2E3]
MVAITPTPKIKNLDKLLMHCQRRRYQAKSNIICAGDRSDTLFFIIKGSVTILIEDDDGREMIIAYLNAGDFFGELGLFEQ
AGQEQERSAWVRAKVECEVAEISYCKFRELSQQDPDILYVLSGQIAQRLRNTTRKVGDLAFFDVTGRVARCLLELCKQPD
AMTHPDGMQIKVTRQEIGRIVGCSREMVGRVLKDLEERNLVNVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=136602 AO353_RS07200 WP_054594293.1 1579919..1580563(+) (crp) [Pseudomonas fluorescens strain FW300-N2E3]
ATGGTTGCTATTACCCCAACACCCAAAATCAAGAACCTCGACAAGTTATTGATGCATTGCCAGCGCCGTCGCTATCAGGC
CAAGAGCAATATCATTTGCGCGGGCGATCGTTCGGATACGCTGTTTTTCATCATCAAGGGCTCGGTCACCATTCTCATCG
AGGACGACGATGGTCGGGAAATGATCATCGCCTACCTCAATGCCGGGGACTTCTTCGGCGAGCTGGGTCTGTTCGAACAA
GCCGGGCAGGAACAGGAGCGCAGCGCCTGGGTTCGCGCCAAGGTCGAATGCGAAGTGGCCGAGATCAGCTACTGCAAGTT
CCGCGAGCTGTCCCAGCAAGACCCGGACATTCTCTATGTGCTCAGTGGCCAGATTGCCCAGCGCCTGCGCAATACCACAC
GCAAGGTCGGCGACCTGGCGTTCTTCGACGTCACCGGGCGGGTTGCGCGCTGCTTGCTGGAGCTGTGCAAACAGCCTGAC
GCCATGACGCACCCGGACGGCATGCAGATCAAGGTTACCCGTCAGGAAATCGGCCGGATCGTCGGTTGCTCGCGGGAAAT
GGTCGGGCGCGTGCTCAAGGATCTGGAAGAGCGCAATCTGGTCAACGTCAAAGGCAAGACCATGGTGGTCTTCGGTACCC
GCTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(22-114)

Bacterial regulatory proteins, crp family (Crp)

(170-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

64.532

94.86

0.612
  crp Haemophilus influenzae Rd KW20

57.426

94.393

0.542
  crp Acinetobacter baumannii D1279779

52.607

98.598

0.519

Multiple sequence alignment