Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | AO353_RS01965 | Genome accession | NZ_CP012830 |
| Coordinates | 415613..415948 (-) | Length | 111 a.a. |
| NCBI ID | WP_054593446.1 | Uniprot ID | - |
| Organism | Pseudomonas fluorescens strain FW300-N2E3 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 410613..420948
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AO353_RS01945 (AO353_01945) | - | 411849..412769 (+) | 921 | WP_054593443.1 | urea transporter | - |
| AO353_RS01950 (AO353_01950) | - | 412791..413615 (+) | 825 | WP_054593444.1 | ion transporter | - |
| AO353_RS01955 (AO353_01955) | - | 413705..414703 (+) | 999 | WP_054593445.1 | sulfate ABC transporter substrate-binding protein | - |
| AO353_RS01960 (AO353_01960) | - | 414766..415395 (-) | 630 | WP_173859993.1 | DUF5666 domain-containing protein | - |
| AO353_RS01965 (AO353_01965) | comEA/comE1 | 415613..415948 (-) | 336 | WP_054593446.1 | ComEA family DNA-binding protein | Machinery gene |
| AO353_RS01970 (AO353_01970) | - | 416063..418057 (-) | 1995 | WP_054593447.1 | polysaccharide biosynthesis protein | - |
| AO353_RS01975 (AO353_01975) | - | 418144..419163 (-) | 1020 | WP_054593448.1 | MraY family glycosyltransferase | - |
| AO353_RS01980 (AO353_01980) | - | 419160..420131 (-) | 972 | WP_054593449.1 | UDP-glucose 4-epimerase family protein | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 11552.16 Da Isoelectric Point: 4.7863
>NTDB_id=136586 AO353_RS01965 WP_054593446.1 415613..415948(-) (comEA/comE1) [Pseudomonas fluorescens strain FW300-N2E3]
MRTGYFYSLVFALLTSASIAAIAAPATNTEAVTAPLTVQVAPSGEAAKVDLNTADATTLQRELAGVGEAKAKAIVAYRES
NGPFASVDELLEVKGIGKAILDKNRDKLEVN
MRTGYFYSLVFALLTSASIAAIAAPATNTEAVTAPLTVQVAPSGEAAKVDLNTADATTLQRELAGVGEAKAKAIVAYRES
NGPFASVDELLEVKGIGKAILDKNRDKLEVN
Nucleotide
Download Length: 336 bp
>NTDB_id=136586 AO353_RS01965 WP_054593446.1 415613..415948(-) (comEA/comE1) [Pseudomonas fluorescens strain FW300-N2E3]
ATGCGTACAGGCTATTTCTACTCTCTGGTTTTTGCCCTGCTGACCAGCGCCTCTATTGCCGCTATCGCTGCGCCAGCGAC
AAACACGGAGGCTGTAACCGCGCCATTGACCGTACAGGTCGCACCGTCCGGGGAGGCTGCAAAAGTCGATCTCAATACGG
CGGATGCAACGACACTGCAGCGGGAACTCGCCGGAGTAGGTGAGGCCAAGGCCAAGGCGATTGTTGCATATCGTGAGAGT
AATGGACCGTTTGCATCGGTGGATGAGTTGTTGGAGGTCAAGGGCATCGGCAAGGCGATTCTGGACAAGAATCGCGACAA
GCTTGAGGTGAACTGA
ATGCGTACAGGCTATTTCTACTCTCTGGTTTTTGCCCTGCTGACCAGCGCCTCTATTGCCGCTATCGCTGCGCCAGCGAC
AAACACGGAGGCTGTAACCGCGCCATTGACCGTACAGGTCGCACCGTCCGGGGAGGCTGCAAAAGTCGATCTCAATACGG
CGGATGCAACGACACTGCAGCGGGAACTCGCCGGAGTAGGTGAGGCCAAGGCCAAGGCGATTGTTGCATATCGTGAGAGT
AATGGACCGTTTGCATCGGTGGATGAGTTGTTGGAGGTCAAGGGCATCGGCAAGGCGATTCTGGACAAGAATCGCGACAA
GCTTGAGGTGAACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
48.077 |
93.694 |
0.45 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
45.045 |
100 |
0.45 |
| comEA | Acinetobacter baylyi ADP1 |
49.398 |
74.775 |
0.369 |
| comEA | Streptococcus thermophilus LMD-9 |
38.462 |
93.694 |
0.36 |
| comEA | Legionella pneumophila strain ERS1305867 |
40 |
90.09 |
0.36 |
| comEA | Legionella pneumophila str. Paris |
40 |
90.09 |
0.36 |
| comEA | Vibrio cholerae C6706 |
40.404 |
89.189 |
0.36 |
| comEA | Vibrio cholerae strain A1552 |
40.404 |
89.189 |
0.36 |