Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RK21_RS16740 Genome accession   NZ_CP010359
Coordinates   3675714..3677927 (-) Length   737 a.a.
NCBI ID   WP_041506480.1    Uniprot ID   -
Organism   Pseudomonas plecoglossicida strain NyZ12     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3670714..3682927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK21_RS16705 (RK21_03492) murB 3670957..3671976 (-) 1020 WP_023662429.1 UDP-N-acetylmuramate dehydrogenase -
  RK21_RS16710 (RK21_03493) - 3671973..3672437 (-) 465 WP_013971567.1 low molecular weight protein-tyrosine-phosphatase -
  RK21_RS16715 (RK21_03494) kdsB 3672437..3673201 (-) 765 WP_013971566.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RK21_RS16720 (RK21_03495) - 3673198..3673383 (-) 186 WP_011532874.1 Trm112 family protein -
  RK21_RS16725 (RK21_03496) lpxK 3673428..3674429 (-) 1002 WP_013971565.1 tetraacyldisaccharide 4'-kinase -
  RK21_RS16730 (RK21_03497) - 3674429..3674863 (-) 435 WP_013971564.1 ExbD/TolR family protein -
  RK21_RS16735 (RK21_03498) exbB 3674860..3675495 (-) 636 WP_003259970.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RK21_RS16740 (RK21_03499) comA 3675714..3677927 (-) 2214 WP_041506480.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RK21_RS29205 - 3678070..3678576 (+) 507 Protein_3377 DUF2062 domain-containing protein -
  RK21_RS16745 (RK21_03500) - 3678586..3679365 (-) 780 WP_003260104.1 ABC transporter permease -
  RK21_RS16750 (RK21_03501) - 3679362..3680294 (-) 933 WP_013971560.1 ABC transporter ATP-binding protein -
  RK21_RS16755 (RK21_03503) - 3680439..3681062 (-) 624 WP_024086519.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79516.34 Da        Isoelectric Point: 10.4801

>NTDB_id=136586 RK21_RS16740 WP_041506480.1 3675714..3677927(-) (comA) [Pseudomonas plecoglossicida strain NyZ12]
MRTGMFALALGLLCLGFLPALPSVGWLVLLAVAGGLGLFTRLWPLGCFLLGLCWACWSAQQALDDRLATGLDGRTLWLEG
RVVGLPTRTAQGVRFELDAARSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVAGGWRDTLRQRLLAVDANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRQLGATLPLLLALVAVLLLEPL
AALLPGFWLSFAAVATLVYCFSARLGNWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDVLFRLLALAAQQPAWLPPAVPLWAWLLVCLGALLVLMPRGVPLRGLGGVMLLALWV
PRETVPFGQVEVWQLDVGQGLAVLLRTRHHNLLYDAGPARGESDLGERVVLPTLRKLGVGSLDLMLVSHAHADHAGGAGA
IIRGLPVKRVIDGEVLDEMRLQPCASGEQWTWDGVRFSLWRWADGQSSNDRSCALLVEAQGERLLLAGDMEAGAERAWLA
ATEAPRIDWLQSPHHGSRSSSSEAFIRATAPREVLISRGRNNSFGHPHAQVVERYRRHGVVMHDTAEQGALRLVLGRLGE
VESVRRQRRFWRDAGGG

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=136586 RK21_RS16740 WP_041506480.1 3675714..3677927(-) (comA) [Pseudomonas plecoglossicida strain NyZ12]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTCCCCGCATTGCCATCTGTCGGATGGCT
AGTGCTGCTGGCTGTAGCCGGTGGCCTCGGCCTGTTCACGCGGCTGTGGCCGCTGGGCTGTTTTCTGTTGGGCCTGTGTT
GGGCCTGCTGGTCTGCGCAGCAGGCCCTGGATGACCGCCTGGCCACCGGGCTGGATGGTCGCACCTTGTGGCTTGAGGGC
CGGGTGGTCGGCCTGCCGACCCGGACTGCGCAGGGTGTGCGCTTCGAGCTGGACGCGGCCCGCTCGCGGCGGGCAGAGCT
GCCGCAGCGCCTGCAACTGAGCTGGTTCGACGGCCCGCCGCTGCGCGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCGCATGGGCCGGACCGTGAGGCGCAATTGCTGGCGCGGCGGGTCGGTGCGACCGGT
ACGGTCAAGGCCGGGCAGTTGCTGGCGCCGGTTGCCGGCGGCTGGCGCGACACGCTGCGCCAGCGCCTGCTGGCAGTGGA
CGCCAATGGCCGGCAGGCAGCGTTGGTGGCGCTGGTGCTTGGCGACGGCGCGGGCCTGGCCCGGGAGGACTGGCAAACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATCTCCGGCCAGCACATCGGCTTGGTTGCCGGCTTGCTGTATGGCCTG
GTTGCCGGGCTGGCGCGTTGGGGGCTGTGGCCCGCTCGTCTGCCGTGGCTGCCCTGGGCGTGTGGCTTGGCCATGGCTGC
TGCACTGGCCTACGGTTGGTTGGCTGGTGGCGGTGTACCGGTGCAGCGTGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGCCTGCGTTTTCGCCAACTGGGTGCGACCTTGCCGTTGTTGCTGGCGCTGGTTGCCGTACTGTTGCTGGAACCGTTG
GCCGCGCTGCTGCCCGGGTTCTGGCTATCGTTCGCGGCCGTGGCCACGCTTGTCTATTGCTTCAGTGCCCGCCTGGGCAA
CTGGCGGCCCTGGCAGGCCTGGACGCGGGCGCAATGGGTGATTGCGATCGGCTTGTTGCCGGTACTGCTGGCTACGGGCT
TGCCGGTGAGCTTGAGTGCGCCGCTGGCCAACCTTGTTGCGGTGCCGTGGGTCAGCTTGGCAGTGCTGCCATTGGCGTTG
CTGGGCACTTTGCTGCTGCCGTTGGGCGGGGTAGGGGAGGCGCTGCTCTGGCTGGCGGGTGGTTTGCTTGATGTGCTTTT
CCGGCTGCTGGCGCTGGCGGCCCAGCAGCCGGCGTGGCTGCCACCAGCCGTGCCGTTGTGGGCCTGGCTGCTGGTGTGCC
TGGGTGCGCTGCTGGTTTTGATGCCCCGTGGCGTACCACTGCGCGGGTTGGGTGGCGTAATGCTGCTGGCGCTGTGGGTA
CCCCGGGAGACGGTGCCGTTCGGCCAGGTCGAGGTCTGGCAGCTGGACGTCGGCCAGGGGCTGGCGGTGCTGTTGCGCAC
TCGGCATCACAACCTGCTGTACGACGCCGGGCCGGCCAGGGGAGAGAGCGACCTGGGCGAGCGGGTGGTGTTGCCGACCT
TGCGCAAGCTGGGGGTGGGCAGCCTGGACTTGATGCTGGTCAGCCACGCCCATGCCGACCACGCCGGTGGTGCTGGTGCA
ATCATACGTGGCCTGCCGGTCAAGCGGGTAATCGACGGCGAAGTGCTGGATGAAATGCGACTGCAACCTTGTGCCAGTGG
CGAGCAATGGACGTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGCTGATGGACAGAGCAGCAATGACCGCTCCTGTG
CGTTGCTGGTCGAGGCGCAGGGTGAGCGGTTGTTGCTGGCGGGAGATATGGAAGCCGGTGCCGAACGGGCCTGGCTGGCG
GCCACAGAAGCGCCGCGGATCGACTGGCTGCAGTCGCCGCACCATGGCAGCCGCAGTTCGTCCAGCGAGGCCTTCATCCG
CGCCACGGCGCCGCGCGAGGTACTGATTTCGCGCGGGCGCAACAACAGCTTCGGGCACCCGCATGCGCAGGTGGTCGAAC
GTTATCGGCGGCATGGGGTGGTGATGCATGACACGGCGGAGCAGGGGGCGTTGCGGTTGGTGCTGGGGAGGCTGGGGGAG
GTCGAGAGTGTGCGCCGACAGCGGCGTTTCTGGAGGGATGCGGGCGGTGGCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(496-673)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.249

97.558

0.578
  comA Ralstonia pseudosolanacearum GMI1000

34.904

100

0.372

Multiple sequence alignment