Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RK21_RS16735 Genome accession   NZ_CP010359
Coordinates   3674860..3675495 (-) Length   211 a.a.
NCBI ID   WP_003259970.1    Uniprot ID   V9UW47
Organism   Pseudomonas plecoglossicida strain NyZ12     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3669860..3680495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK21_RS16705 (RK21_03492) murB 3670957..3671976 (-) 1020 WP_023662429.1 UDP-N-acetylmuramate dehydrogenase -
  RK21_RS16710 (RK21_03493) - 3671973..3672437 (-) 465 WP_013971567.1 low molecular weight protein-tyrosine-phosphatase -
  RK21_RS16715 (RK21_03494) kdsB 3672437..3673201 (-) 765 WP_013971566.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RK21_RS16720 (RK21_03495) - 3673198..3673383 (-) 186 WP_011532874.1 Trm112 family protein -
  RK21_RS16725 (RK21_03496) lpxK 3673428..3674429 (-) 1002 WP_013971565.1 tetraacyldisaccharide 4'-kinase -
  RK21_RS16730 (RK21_03497) - 3674429..3674863 (-) 435 WP_013971564.1 ExbD/TolR family protein -
  RK21_RS16735 (RK21_03498) exbB 3674860..3675495 (-) 636 WP_003259970.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RK21_RS16740 (RK21_03499) comA 3675714..3677927 (-) 2214 WP_041506480.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RK21_RS29205 - 3678070..3678576 (+) 507 Protein_3377 DUF2062 domain-containing protein -
  RK21_RS16745 (RK21_03500) - 3678586..3679365 (-) 780 WP_003260104.1 ABC transporter permease -
  RK21_RS16750 (RK21_03501) - 3679362..3680294 (-) 933 WP_013971560.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22855.16 Da        Isoelectric Point: 7.3616

>NTDB_id=136585 RK21_RS16735 WP_003259970.1 3674860..3675495(-) (exbB) [Pseudomonas plecoglossicida strain NyZ12]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRVSRVTPPHLLGQVWIWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=136585 RK21_RS16735 WP_003259970.1 3674860..3675495(-) (exbB) [Pseudomonas plecoglossicida strain NyZ12]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGTCAGTCGCGTCACCCCGCCGCACCTGCTCGGCCAGGTGTGGATATGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCTGATTCGCCATTGGGCGAAATCCTTGCCGCCGGCCTGGCCAAC
TCGCGCCATGGTCGCGAAATCATGAAGGAATGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCAGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTATTCTTCCACCGCTTCCTGCTGCGCCGTATCGATGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V9UW47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829

Multiple sequence alignment