Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | EHS42_RS07610 | Genome accession | NZ_CP010350 |
| Coordinates | 1545020..1545421 (+) | Length | 133 a.a. |
| NCBI ID | WP_058952512.1 | Uniprot ID | - |
| Organism | Acinetobacter johnsonii XBB1 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1540020..1550421
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHS42_RS07580 (RZ95_07545) | kdsB | 1540823..1541584 (+) | 762 | WP_058951868.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| EHS42_RS07585 (RZ95_07550) | - | 1541604..1542587 (+) | 984 | WP_058951869.1 | DNA polymerase III subunit delta' | - |
| EHS42_RS07590 (RZ95_07555) | - | 1542602..1542943 (+) | 342 | WP_058869739.1 | PilZ domain-containing protein | - |
| EHS42_RS07595 (RZ95_07560) | - | 1542970..1543743 (+) | 774 | WP_058951870.1 | TatD family hydrolase | - |
| EHS42_RS07600 (RZ95_07565) | - | 1543789..1544403 (+) | 615 | WP_004696845.1 | TetR/AcrR family transcriptional regulator | - |
| EHS42_RS07605 (RZ95_07570) | - | 1544416..1544985 (+) | 570 | WP_058951871.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| EHS42_RS07610 (RZ95_07575) | xcpV | 1545020..1545421 (+) | 402 | WP_058952512.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| EHS42_RS07615 (RZ95_07580) | xcpW | 1545418..1546038 (+) | 621 | WP_058951872.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| EHS42_RS07620 (RZ95_07585) | gspK | 1546117..1547067 (+) | 951 | WP_058951873.1 | type II secretion system minor pseudopilin GspK | - |
| EHS42_RS07625 (RZ95_07590) | - | 1547190..1547786 (+) | 597 | WP_004696854.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| EHS42_RS07630 (RZ95_07595) | ung | 1547828..1548541 (+) | 714 | WP_004696856.1 | uracil-DNA glycosylase | - |
| EHS42_RS07635 (RZ95_07600) | - | 1548538..1549659 (+) | 1122 | WP_058951874.1 | enoyl-CoA hydratase/isomerase family protein | - |
| EHS42_RS07640 (RZ95_07605) | tadA | 1549665..1550165 (+) | 501 | WP_058951875.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 133 a.a. Molecular weight: 14675.76 Da Isoelectric Point: 9.6943
>NTDB_id=136556 EHS42_RS07610 WP_058952512.1 1545020..1545421(+) (xcpV) [Acinetobacter johnsonii XBB1]
MKHYFINPRSGFTLLEVMVALAIFATAAVALTKVGMQYTQSTAHAILRTKAQFVALNEISMMEINRDWLQGTASKQITQQ
GETWQIDKSAQATISTNVQRVNVQVSLVNTETGKVDSGVTSLVFFNHRDGSQP
MKHYFINPRSGFTLLEVMVALAIFATAAVALTKVGMQYTQSTAHAILRTKAQFVALNEISMMEINRDWLQGTASKQITQQ
GETWQIDKSAQATISTNVQRVNVQVSLVNTETGKVDSGVTSLVFFNHRDGSQP
Nucleotide
Download Length: 402 bp
>NTDB_id=136556 EHS42_RS07610 WP_058952512.1 1545020..1545421(+) (xcpV) [Acinetobacter johnsonii XBB1]
ATGAAACATTATTTCATTAATCCTCGCTCAGGATTTACATTGCTGGAAGTGATGGTGGCACTGGCTATTTTTGCTACAGC
AGCGGTCGCTTTAACCAAAGTGGGTATGCAATATACTCAGTCTACAGCCCATGCCATCTTGCGTACCAAGGCACAATTTG
TTGCCTTGAATGAAATTTCTATGATGGAAATCAATCGTGATTGGCTACAAGGCACGGCCTCTAAACAAATCACCCAACAA
GGTGAAACTTGGCAAATTGATAAATCAGCGCAGGCAACGATTAGTACTAATGTGCAACGCGTCAATGTACAAGTGAGCTT
GGTGAATACAGAAACTGGAAAAGTAGATTCAGGTGTTACGAGTTTAGTTTTTTTTAACCATCGTGATGGAAGCCAACCAT
GA
ATGAAACATTATTTCATTAATCCTCGCTCAGGATTTACATTGCTGGAAGTGATGGTGGCACTGGCTATTTTTGCTACAGC
AGCGGTCGCTTTAACCAAAGTGGGTATGCAATATACTCAGTCTACAGCCCATGCCATCTTGCGTACCAAGGCACAATTTG
TTGCCTTGAATGAAATTTCTATGATGGAAATCAATCGTGATTGGCTACAAGGCACGGCCTCTAAACAAATCACCCAACAA
GGTGAAACTTGGCAAATTGATAAATCAGCGCAGGCAACGATTAGTACTAATGTGCAACGCGTCAATGTACAAGTGAGCTT
GGTGAATACAGAAACTGGAAAAGTAGATTCAGGTGTTACGAGTTTAGTTTTTTTTAACCATCGTGATGGAAGCCAACCAT
GA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
75.214 |
87.97 |
0.662 |