Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   EHS42_RS07615 Genome accession   NZ_CP010350
Coordinates   1545418..1546038 (+) Length   206 a.a.
NCBI ID   WP_058951872.1    Uniprot ID   A0AAJ6LDB4
Organism   Acinetobacter johnsonii XBB1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1540418..1551038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHS42_RS07580 (RZ95_07545) kdsB 1540823..1541584 (+) 762 WP_058951868.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  EHS42_RS07585 (RZ95_07550) - 1541604..1542587 (+) 984 WP_058951869.1 DNA polymerase III subunit delta' -
  EHS42_RS07590 (RZ95_07555) - 1542602..1542943 (+) 342 WP_058869739.1 PilZ domain-containing protein -
  EHS42_RS07595 (RZ95_07560) - 1542970..1543743 (+) 774 WP_058951870.1 TatD family hydrolase -
  EHS42_RS07600 (RZ95_07565) - 1543789..1544403 (+) 615 WP_004696845.1 TetR/AcrR family transcriptional regulator -
  EHS42_RS07605 (RZ95_07570) - 1544416..1544985 (+) 570 WP_058951871.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  EHS42_RS07610 (RZ95_07575) xcpV 1545020..1545421 (+) 402 WP_058952512.1 type II secretion system minor pseudopilin GspI Machinery gene
  EHS42_RS07615 (RZ95_07580) xcpW 1545418..1546038 (+) 621 WP_058951872.1 type II secretion system minor pseudopilin GspJ Machinery gene
  EHS42_RS07620 (RZ95_07585) gspK 1546117..1547067 (+) 951 WP_058951873.1 type II secretion system minor pseudopilin GspK -
  EHS42_RS07625 (RZ95_07590) - 1547190..1547786 (+) 597 WP_004696854.1 6-pyruvoyl trahydropterin synthase family protein -
  EHS42_RS07630 (RZ95_07595) ung 1547828..1548541 (+) 714 WP_004696856.1 uracil-DNA glycosylase -
  EHS42_RS07635 (RZ95_07600) - 1548538..1549659 (+) 1122 WP_058951874.1 enoyl-CoA hydratase/isomerase family protein -
  EHS42_RS07640 (RZ95_07605) tadA 1549665..1550165 (+) 501 WP_058951875.1 tRNA adenosine(34) deaminase TadA -
  EHS42_RS07645 (RZ95_07610) - 1550241..1550672 (+) 432 WP_058951876.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23533.13 Da        Isoelectric Point: 5.9707

>NTDB_id=136557 EHS42_RS07615 WP_058951872.1 1545418..1546038(+) (xcpW) [Acinetobacter johnsonii XBB1]
MTKRSGFTLVELLVAIAIFAVLSALGWKVFDYLIKIKERNTQHEQRLGQLQEAYQQVLRDTVQIVPVTANVAGQVQPAVM
LQNGQLTFSKTGVTDPLMQGIPPEERVEYIYKADEKKLYRYKYKNLNQTGNVQPETSVLLDSVDQFQIMLLNPNEMAQWP
EVALSENDVTQAKILPRGLKINLTVNEVSYEWVFSLLNTDFLKQKN

Nucleotide


Download         Length: 621 bp        

>NTDB_id=136557 EHS42_RS07615 WP_058951872.1 1545418..1546038(+) (xcpW) [Acinetobacter johnsonii XBB1]
ATGACAAAACGCTCAGGCTTTACTTTGGTTGAGTTATTGGTGGCAATCGCGATTTTTGCTGTGCTTTCAGCTTTGGGTTG
GAAGGTTTTTGATTATCTGATCAAGATTAAAGAGCGTAATACCCAACATGAACAGCGCTTAGGTCAGCTACAAGAAGCAT
ATCAACAAGTGTTACGTGACACGGTGCAAATTGTACCAGTTACTGCCAATGTTGCGGGGCAGGTTCAACCCGCAGTCATG
TTGCAAAATGGTCAGTTGACCTTTAGTAAAACTGGCGTGACTGATCCTTTAATGCAAGGCATACCGCCTGAAGAGCGAGT
TGAATATATTTATAAAGCAGATGAAAAAAAACTGTACCGTTATAAATATAAAAATTTAAATCAAACAGGTAATGTTCAAC
CTGAAACCAGTGTTTTACTTGATTCAGTTGATCAATTTCAAATTATGTTACTCAATCCCAATGAAATGGCACAATGGCCT
GAGGTGGCATTGAGTGAAAATGATGTAACTCAGGCAAAAATACTACCGCGCGGTTTAAAAATAAACCTCACTGTCAACGA
AGTGAGTTATGAATGGGTGTTTAGTTTATTAAATACAGACTTTTTAAAACAAAAAAATTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(59-188)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

58.706

97.573

0.573

Multiple sequence alignment