Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SanJ4211_RS06735 Genome accession   NZ_CP012805
Coordinates   1354116..1354712 (-) Length   198 a.a.
NCBI ID   WP_021001926.1    Uniprot ID   A0A3Q9EZ00
Organism   Streptococcus anginosus strain J4211     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1349116..1359712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4211_RS06710 (SanJ4211_1332c) - 1349505..1350185 (-) 681 WP_171004459.1 TIGR02206 family membrane protein -
  SanJ4211_RS06715 (SanJ4211_1333c) - 1350192..1350890 (-) 699 WP_003023748.1 TIGR02206 family membrane protein -
  SanJ4211_RS06720 (SanJ4211_1334c) - 1350894..1351445 (-) 552 WP_021001923.1 DUF1697 domain-containing protein -
  SanJ4211_RS06725 (SanJ4211_1335c) - 1351435..1352805 (-) 1371 WP_021001924.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  SanJ4211_RS06730 (SanJ4211_1336c) - 1352937..1353983 (-) 1047 WP_021001925.1 D-alanine--D-alanine ligase -
  SanJ4211_RS06735 (SanJ4211_1337c) recR 1354116..1354712 (-) 597 WP_021001926.1 recombination mediator RecR Machinery gene
  SanJ4211_RS06740 (SanJ4211_1338c) pbp2b 1354723..1356783 (-) 2061 WP_021001927.1 penicillin-binding protein PBP2B -
  SanJ4211_RS10125 (SanJ4211_1339c) - 1357146..1357313 (-) 168 WP_003023739.1 hypothetical protein -
  SanJ4211_RS06745 (SanJ4211_1340c) - 1357320..1358525 (-) 1206 WP_003023737.1 hypothetical protein -
  SanJ4211_RS06750 (SanJ4211_1341c) HI0659 1358547..1358843 (-) 297 WP_003023736.1 helix-turn-helix domain-containing protein Machinery gene
  SanJ4211_RS06755 (SanJ4211_1342c) - 1358833..1359198 (-) 366 WP_003023734.1 type II toxin-antitoxin system RelE/ParE family toxin -
  SanJ4211_RS06760 (SanJ4211_1343c) - 1359473..1359703 (-) 231 WP_003023732.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21621.66 Da        Isoelectric Point: 4.3015

>NTDB_id=136543 SanJ4211_RS06735 WP_021001926.1 1354116..1354712(-) (recR) [Streptococcus anginosus strain J4211]
MLYPTPIAKLIDSFSKLPGIGIKTATRLAFYTIGMSDDDVNEFAKNLLAAKRELTYCSICGNLTDDDPCAICTDETRDQS
TILVVEDSRDVSAMENIQEYHGLYHVLQGLISPMNGIGPDDINLKSLITRLMDSEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=136543 SanJ4211_RS06735 WP_021001926.1 1354116..1354712(-) (recR) [Streptococcus anginosus strain J4211]
ATGCTTTATCCAACACCGATTGCAAAATTGATTGATAGCTTTTCAAAATTACCAGGAATTGGCATAAAAACAGCAACGCG
TTTGGCGTTTTATACCATTGGTATGAGTGATGATGATGTCAATGAATTTGCTAAAAATTTGCTTGCAGCAAAACGTGAGC
TGACCTATTGTTCTATTTGTGGTAATCTAACGGATGATGATCCTTGTGCTATCTGCACCGATGAGACACGGGATCAATCT
ACTATTTTGGTTGTAGAAGATAGCCGAGATGTATCTGCTATGGAAAATATTCAAGAATACCATGGTTTGTACCATGTTTT
GCAGGGATTGATTTCTCCTATGAATGGTATTGGACCAGACGACATCAATCTGAAAAGTCTCATTACACGGTTGATGGATA
GTGAGGTAACAGAGGTAATTGTGGCAACCAATGCGACAGCAGATGGGGAAGCGACTTCCATGTATATCTCGAGGGTGTTA
AAGCCAGCTGGTATCAAGGTAACGCGCCTGGCTCGTGGATTAGCAGTTGGTTCTGATATTGAATATGCAGACGAAGTAAC
ACTGCTTCGGGCTATTGAGAATCGCACAGAATTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9EZ00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

91.919

100

0.919
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.718

98.485

0.48

Multiple sequence alignment