Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   SanJ4211_RS06750 Genome accession   NZ_CP012805
Coordinates   1358547..1358843 (-) Length   98 a.a.
NCBI ID   WP_003023736.1    Uniprot ID   -
Organism   Streptococcus anginosus strain J4211     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1353547..1363843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4211_RS06735 (SanJ4211_1337c) recR 1354116..1354712 (-) 597 WP_021001926.1 recombination mediator RecR Machinery gene
  SanJ4211_RS06740 (SanJ4211_1338c) pbp2b 1354723..1356783 (-) 2061 WP_021001927.1 penicillin-binding protein PBP2B -
  SanJ4211_RS10125 (SanJ4211_1339c) - 1357146..1357313 (-) 168 WP_003023739.1 hypothetical protein -
  SanJ4211_RS06745 (SanJ4211_1340c) - 1357320..1358525 (-) 1206 WP_003023737.1 hypothetical protein -
  SanJ4211_RS06750 (SanJ4211_1341c) HI0659 1358547..1358843 (-) 297 WP_003023736.1 helix-turn-helix domain-containing protein Machinery gene
  SanJ4211_RS06755 (SanJ4211_1342c) - 1358833..1359198 (-) 366 WP_003023734.1 type II toxin-antitoxin system RelE/ParE family toxin -
  SanJ4211_RS06760 (SanJ4211_1343c) - 1359473..1359703 (-) 231 WP_003023732.1 hypothetical protein -
  SanJ4211_RS06765 (SanJ4211_1344) - 1359981..1360517 (+) 537 Protein_1322 site-specific integrase -
  SanJ4211_RS06770 (SanJ4211_1345c) - 1360675..1361367 (-) 693 WP_003023729.1 phosphoglycerate mutase -
  SanJ4211_RS06775 (SanJ4211_1346c) - 1361508..1361969 (-) 462 WP_021001929.1 Fur family transcriptional regulator -
  SanJ4211_RS06780 (SanJ4211_1347c) - 1362416..1363717 (-) 1302 WP_057489735.1 LysM peptidoglycan-binding domain-containing protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10699.35 Da        Isoelectric Point: 4.8780

>NTDB_id=136544 SanJ4211_RS06750 WP_003023736.1 1358547..1358843(-) (HI0659) [Streptococcus anginosus strain J4211]
MKNSAIGSNWKDVRAELFSKEEILESDMRVAIMSELIDARNEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEGEQVS

Nucleotide


Download         Length: 297 bp        

>NTDB_id=136544 SanJ4211_RS06750 WP_003023736.1 1358547..1358843(-) (HI0659) [Streptococcus anginosus strain J4211]
ATGAAAAATAGTGCAATTGGTAGTAACTGGAAAGATGTGAGAGCTGAACTTTTTTCCAAAGAGGAAATTTTGGAGAGTGA
TATGCGCGTGGCAATCATGAGTGAGCTGATTGATGCTAGAAATGAAAAAGGGATCAGTCAGAAAAAACTTGAGGAACTAA
GCGGAGTAAGTCAGCCAGTTATTGCTAGAATGGAAACAGGTAAGACAAGTCCACAACTTGATACTGTTTTAAAAGTCTTG
GCAAGTCTTGGGAAAACTTTGGCAGTTGTACCCTTAGAGGGCGAACAGGTAAGCTAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(38-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.341

92.857

0.551