Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FORC17_RS14295 Genome accession   NZ_CP012739
Coordinates   3081226..3083307 (+) Length   693 a.a.
NCBI ID   WP_065090786.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_017     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3076226..3088307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC17_RS14275 (FORC17_2792) gmk 3077146..3077769 (+) 624 WP_011078918.1 guanylate kinase -
  FORC17_RS14280 (FORC17_2793) rpoZ 3077897..3078169 (+) 273 WP_011078919.1 DNA-directed RNA polymerase subunit omega -
  FORC17_RS14285 (FORC17_2794) spoT 3078204..3080324 (+) 2121 WP_011078920.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  FORC17_RS14290 (FORC17_2795) trmH 3080412..3081098 (+) 687 WP_065090785.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  FORC17_RS14295 (FORC17_2796) recG 3081226..3083307 (+) 2082 WP_065090786.1 ATP-dependent DNA helicase RecG Machinery gene
  FORC17_RS14300 (FORC17_2797) - 3083563..3084969 (+) 1407 WP_065090787.1 uracil-xanthine permease family protein -
  FORC17_RS14305 (FORC17_2798) envZ 3085046..3086344 (-) 1299 WP_011149224.1 two-component system sensor histidine kinase EnvZ -
  FORC17_RS14310 (FORC17_2799) ompR 3086437..3087156 (-) 720 WP_011078925.1 two-component system response regulator OmpR -
  FORC17_RS14315 (FORC17_2800) greB 3087357..3087839 (-) 483 WP_013572566.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76759.84 Da        Isoelectric Point: 7.6089

>NTDB_id=136287 FORC17_RS14295 WP_065090786.1 3081226..3083307(+) (recG) [Vibrio vulnificus strain FORC_017]
MSAQLLSAVPLTSLSGVGAKVAEKLEKIGLSSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGHVMQVDTLFGKRKM
LTVKLSDGNGTITLRFFNFTAAMKNNFAEGKLVHAYGEIKRGNMGLEIVHPDYKFFAPTQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTDQALALLDKAAVQELLPAGLYDQQLTMGQALHIIHRPSPEINLELFDEGKHPAQVRLIMEELLAQNLSMLAVR
SKGQQDVALPLPPVHQLKQQLLAQLPFSPTNAQARVVQEIEEDLQKAHPMMRLVQGDVGSGKTLVAALAAVRAIEHGHQV
ALMAPTELLAEQHAINFANWFEKMGIPVGWLAGKLKGKAKEAELARIASGEAKMVVGTHALFQEHVVFDHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKREDIVERIRHACL
NEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVRIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVP
NASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHAPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRAARYIHHNYPQNAAAIIERWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=136287 FORC17_RS14295 WP_065090786.1 3081226..3083307(+) (recG) [Vibrio vulnificus strain FORC_017]
ATGTCTGCCCAACTGTTATCTGCTGTCCCCCTCACATCCCTCAGTGGGGTCGGTGCTAAGGTGGCTGAAAAGCTGGAGAA
AATTGGCCTAAGCAGCGTGCAAGACCTGCTGTTTCACTTGCCACTTCGTTACGAAGACCGCACCCGCATCTACCCGATTG
CCAAATTGCATGCCGGACTATGGGCTGCTGTACAGGGCCATGTGATGCAAGTGGATACCTTGTTTGGTAAACGCAAGATG
TTGACGGTGAAGCTCAGCGACGGGAATGGCACCATCACCTTGCGTTTTTTTAACTTTACCGCGGCAATGAAAAACAATTT
TGCCGAGGGTAAGTTAGTACACGCTTACGGCGAAATTAAGCGCGGTAATATGGGGCTGGAGATCGTTCACCCAGACTACA
AGTTTTTCGCCCCAACGCAGAAGCCCGATGTGGAACAGAGCTTAACGCCTGTTTATCCTACCACCGATGGCTTAAGGCAA
ATCACGCTGCGTAACCTCACAGACCAAGCCCTCGCCCTGCTCGATAAAGCCGCGGTTCAAGAGTTACTGCCTGCCGGGTT
GTATGACCAACAACTGACCATGGGGCAAGCGCTGCACATTATCCATCGTCCTTCGCCGGAGATTAATCTGGAACTGTTCG
ACGAAGGGAAGCACCCTGCCCAAGTTCGCTTAATTATGGAAGAGTTGCTGGCTCAGAACTTATCCATGCTCGCCGTGCGC
AGCAAAGGTCAACAAGATGTCGCGCTGCCACTTCCCCCCGTCCACCAGCTTAAACAACAGCTGTTAGCCCAACTGCCTTT
TTCACCGACCAATGCCCAAGCGCGAGTGGTGCAAGAGATTGAAGAAGATTTGCAAAAAGCGCATCCGATGATGCGTTTGG
TGCAAGGGGATGTCGGCTCGGGTAAAACCTTAGTGGCAGCCTTGGCCGCGGTACGCGCTATCGAACATGGCCACCAAGTG
GCGCTGATGGCGCCCACCGAACTTCTGGCCGAGCAGCACGCGATCAACTTCGCCAATTGGTTTGAAAAAATGGGCATTCC
CGTTGGCTGGCTCGCTGGCAAGCTCAAAGGTAAAGCCAAAGAAGCCGAATTAGCCCGCATTGCCAGTGGCGAAGCGAAAA
TGGTGGTCGGGACACATGCGCTGTTCCAAGAACACGTGGTGTTTGACCATCTTGCCCTTGTGATCATTGATGAACAGCAC
CGCTTTGGCGTACATCAACGCTTGGAACTGCGCGAAAAAGGCGCCAAACAAGGCGCTTACCCACATCAACTGATCATGAC
TGCTACTCCGATCCCTCGCACATTGGCCATGACCGCCTATGCCGATTTGGAAACATCAGTGATCGACGAGTTACCGCCGG
GACGAACCCCGATCCAAACCGTCGCGATTCCCGACACCAAACGCGAGGACATTGTCGAGCGTATTCGTCATGCCTGCCTC
AATGAGGGTAAGCAGGCGTATTGGGTCTGTACCCTGATTGATGAATCGGAAGTATTGGAAGCCCAAGCGGCAGCAGATAC
TGCCGAAGAGCTGCAACGTAAATTGCCTGATGTTCGCATTGGTTTGGTGCATGGCCGAATGAAACCGGCTGAAAAACAAG
CGGTGATGCAAGCGTTCAAAAACAATGAATTGCATCTTTTGGTGGCCACCACAGTGATCGAAGTCGGTGTCGATGTGCCT
AACGCCAGCTTGATGATCATCGAAAACCCCGAGCGCTTGGGTCTCGCACAATTGCACCAGTTGCGCGGTCGCGTGGGTCG
AGGCTCAGTAGCAAGCCACTGCGTATTGCTCTATCACGCTCCGCTGTCCAAAACGGCGCAAAAGCGCCTCTCGGTGCTGC
GCGAAAGTAACGATGGTTTCGTCATTGCTCAGCGCGATCTTGAGATCCGTGGGCCAGGTGAGCTGCTCGGCACCAAACAA
ACTGGCCTGGCGGATTTCAAAATTGCCGATCTCGTCCGCGACCAGCGCCTTATCCCCGAAGTTCAACGCGCCGCACGCTA
CATTCACCACAATTACCCACAAAATGCCGCCGCGATTATTGAACGCTGGTTGGGCGAGCGTGATATTTATTCTAAGGCGT
GA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

RecG wedge domain (RecG_wedge)

(15-172)

DEAD/DEAH box helicase (DEAD)

(271-433)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.107

96.97

0.476
  recG/mmsA Streptococcus pneumoniae R6

39.94

96.825

0.387
  recG/mmsA Streptococcus pneumoniae R36A

39.94

96.825

0.387
  recG Bacillus subtilis subsp. subtilis str. 168

38.565

96.537

0.372