Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   FORC17_RS04760 Genome accession   NZ_CP012739
Coordinates   1015678..1017927 (+) Length   749 a.a.
NCBI ID   WP_065090202.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_017     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1010678..1022927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC17_RS04735 (FORC17_0881) - 1010993..1011562 (-) 570 WP_065090201.1 hypothetical protein -
  FORC17_RS04740 (FORC17_0882) lolC 1011827..1013032 (+) 1206 WP_060531130.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  FORC17_RS04745 (FORC17_0883) lolD 1013025..1013708 (+) 684 WP_011079967.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  FORC17_RS04750 (FORC17_0884) lolE 1013720..1014964 (+) 1245 WP_060531132.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  FORC17_RS04755 (FORC17_0885) - 1015160..1015669 (-) 510 WP_011079969.1 DUF2062 domain-containing protein -
  FORC17_RS04760 (FORC17_0886) comEC 1015678..1017927 (+) 2250 WP_065090202.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FORC17_RS04765 (FORC17_0887) msbA 1017960..1019711 (+) 1752 WP_043877274.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  FORC17_RS04770 (FORC17_0888) lpxK 1019711..1020718 (+) 1008 WP_011150832.1 tetraacyldisaccharide 4'-kinase -
  FORC17_RS04775 (FORC17_0889) - 1020699..1020878 (+) 180 WP_011079973.1 Trm112 family protein -
  FORC17_RS04780 (FORC17_0890) kdsB 1020878..1021633 (+) 756 WP_011150831.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FORC17_RS04785 (FORC17_0891) - 1021805..1022593 (+) 789 WP_045620541.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 749 a.a.        Molecular weight: 84069.15 Da        Isoelectric Point: 8.7042

>NTDB_id=136247 FORC17_RS04760 WP_065090202.1 1015678..1017927(+) (comEC) [Vibrio vulnificus strain FORC_017]
MTLLGNNWLLASFSATLISASYWPLMPSWPWLMLTVVAIFIIIVRKTCRYLLGVTIALLIAISAGNLMQWQVKTLFQAGE
NITINGAVDSPFKQISHGYEGVVSITAINNSHLVWTLRPKVRLISPIPLGQGDQIVAHVTLKRVYGLLNEAGFDAERFAV
SQGIVGRATIDDSRSWRLVSVKGGRQALIEKAQQLLVRSDHTGYLLGLSFGLRDDITDEQWQQLKQSGLIHLLSISGLHI
GMAFGIGYWLGHWLRFGRLTLVWLPLAIGLSLSWSYAWLAGFTLPTQRAIVFVTLVALFSFTSGQVGRWTVLLLALAFCL
AMSPFSALSTSLWLSFLAVSCVFLVVDLRESSSSWIGKMKSVFCIQGMLLLYLAPVTAYFFSGLSLAAWLYNFLFIPWFS
LVVVPVIFVALVLTALDMMPVASMLWQLADLSLWPLTYAMPYAHLGWWGLSSFQVVLVALCALAVMLRHFIRWQLSVVLI
ILLSISSLSVHSLSRTRIDVLDVGHGLAVLIEKDGKTLLYDTGKSWHGGSIAQQVIEPILLSRGSRSLDGVIISHQDDDH
AGGLPYLQQNMRPQWVRSSHYLSDFPCVKGHDFEWQGLKMTVLWPPRQVTRAYNPHSCVIRMEDEENQFSFLMTGDIDAL
AEWILIRDPEQLNSDVVLVPHHGSQTSSIEPFVNAVQAGVAIASLAKGNQWGMPQPKVVETYRRHRTQWFDTGELGQITL
YVEQRNWRIVSRRDTFNAWYRQMLRNQVE

Nucleotide


Download         Length: 2250 bp        

>NTDB_id=136247 FORC17_RS04760 WP_065090202.1 1015678..1017927(+) (comEC) [Vibrio vulnificus strain FORC_017]
ATGACTCTCTTAGGTAACAATTGGTTATTGGCTTCTTTTTCAGCAACCCTTATTTCGGCAAGCTACTGGCCGCTTATGCC
TTCCTGGCCTTGGTTAATGCTAACTGTTGTTGCCATCTTTATCATTATTGTGCGTAAAACGTGTCGTTACTTGCTGGGGG
TGACCATCGCACTTTTGATTGCCATTTCGGCTGGTAACCTTATGCAATGGCAAGTAAAGACCCTATTTCAGGCAGGGGAG
AATATTACCATAAATGGCGCCGTTGACAGCCCTTTTAAGCAAATAAGTCACGGTTATGAAGGTGTTGTTAGCATCACAGC
AATAAATAATAGTCATTTAGTGTGGACCCTGCGACCTAAAGTGCGTTTGATCTCACCCATTCCTCTTGGGCAGGGGGATC
AAATCGTAGCGCATGTTACTCTAAAACGAGTCTATGGGTTACTCAATGAAGCAGGGTTTGATGCCGAACGTTTTGCTGTC
AGCCAAGGCATCGTTGGACGGGCAACTATTGATGATTCTCGCTCTTGGCGTTTGGTCTCCGTGAAGGGAGGGCGACAAGC
GCTGATCGAAAAAGCTCAGCAGCTACTGGTTCGTAGCGATCATACCGGTTATTTACTTGGCTTAAGCTTTGGTCTTCGCG
ACGACATTACCGACGAGCAATGGCAGCAACTCAAGCAAAGTGGTTTGATACATCTACTTTCTATCTCAGGGCTGCACATT
GGTATGGCTTTTGGTATCGGTTACTGGCTCGGGCATTGGTTGCGTTTTGGACGGCTTACTCTTGTTTGGCTGCCGTTGGC
TATTGGACTTAGTCTCAGTTGGAGTTATGCGTGGCTGGCTGGTTTTACTCTGCCAACGCAAAGAGCCATTGTCTTTGTCA
CGTTAGTCGCCTTGTTCTCGTTTACGTCGGGGCAAGTCGGTCGTTGGACAGTCTTGCTGTTGGCACTGGCCTTTTGTCTT
GCGATGTCGCCATTTTCTGCCCTTTCTACCAGTCTCTGGCTCTCGTTTCTTGCTGTCAGTTGCGTCTTTCTGGTGGTTGA
TCTCCGTGAGTCGTCTTCATCTTGGATTGGCAAAATGAAAAGCGTATTTTGCATCCAAGGTATGCTGCTGCTTTATCTCG
CACCTGTGACTGCTTACTTCTTTTCCGGTTTGAGTCTGGCCGCCTGGCTGTATAACTTCCTGTTTATTCCCTGGTTTAGT
TTGGTGGTGGTGCCTGTTATCTTTGTTGCACTCGTGCTGACTGCGCTGGATATGATGCCTGTAGCCAGTATGCTATGGCA
GTTAGCGGATTTAAGTTTATGGCCATTAACTTACGCTATGCCTTACGCCCACTTAGGTTGGTGGGGGCTGTCTTCTTTTC
AGGTGGTGTTGGTCGCGTTGTGCGCGCTCGCTGTGATGCTGAGACATTTTATTCGCTGGCAACTTTCTGTCGTTCTGATC
ATTTTGCTCAGCATTTCTTCACTATCGGTTCACTCTCTTTCTCGCACCCGAATTGACGTTTTAGATGTTGGCCATGGGCT
CGCCGTATTGATTGAGAAAGACGGTAAAACGCTGCTTTATGACACTGGAAAGTCTTGGCATGGTGGAAGTATTGCGCAGC
AAGTGATTGAGCCTATTTTATTGAGTCGGGGTAGTAGAAGCCTTGATGGGGTGATCATCAGCCATCAAGATGACGATCAT
GCAGGCGGCTTGCCCTATTTGCAGCAAAACATGCGCCCACAATGGGTAAGGAGTAGTCATTACTTGAGTGATTTTCCGTG
TGTTAAAGGTCATGACTTTGAGTGGCAAGGGCTTAAAATGACCGTGCTTTGGCCGCCAAGGCAAGTGACTCGTGCCTACA
ATCCCCACTCCTGTGTGATTCGTATGGAGGATGAGGAAAATCAGTTTTCATTTTTGATGACTGGTGATATTGACGCTTTG
GCTGAGTGGATTCTGATTCGTGATCCTGAACAGCTAAACAGCGATGTGGTATTGGTGCCGCATCATGGCAGTCAAACTTC
GTCGATTGAGCCTTTTGTGAACGCCGTCCAGGCAGGTGTGGCAATCGCCTCGTTGGCAAAAGGAAATCAGTGGGGGATGC
CACAACCGAAAGTGGTCGAGACTTATCGACGACATCGCACGCAGTGGTTTGATACTGGTGAGCTGGGTCAGATAACGTTG
TATGTGGAACAGAGAAACTGGCGAATCGTCTCAAGACGCGACACTTTCAACGCTTGGTATAGGCAGATGCTGCGTAACCA
AGTAGAATAG

Domains

Predicted by InterProScan.

Domain of unknown function (DUF4131) (DUF4131)

(27-173)

Competence protein (Competence)

(208-468)

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-682)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

45.491

100

0.458
  comEC Vibrio parahaemolyticus RIMD 2210633

45.418

100

0.457
  comEC Vibrio cholerae strain A1552

43.576

100

0.439