Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   RN86_RS06900 Genome accession   NZ_CP012648
Coordinates   1412203..1412853 (+) Length   216 a.a.
NCBI ID   WP_053794513.1    Uniprot ID   -
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1407203..1417853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS06875 (RN86_06870) - 1407459..1408469 (-) 1011 WP_053794509.1 lactonase family protein -
  RN86_RS06880 (RN86_06875) - 1408745..1409008 (+) 264 WP_053794510.1 hypothetical protein -
  RN86_RS06885 (RN86_06880) - 1409039..1410292 (+) 1254 WP_053794511.1 efflux RND transporter periplasmic adaptor subunit -
  RN86_RS06890 (RN86_06885) - 1410279..1410959 (+) 681 WP_053794512.1 ABC transporter ATP-binding protein -
  RN86_RS06895 (RN86_06890) - 1410967..1412184 (+) 1218 WP_008809356.1 ABC transporter permease -
  RN86_RS06900 (RN86_06895) scnR 1412203..1412853 (+) 651 WP_053794513.1 response regulator transcription factor Regulator
  RN86_RS06905 (RN86_06900) - 1412856..1414217 (+) 1362 WP_053794514.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24716.71 Da        Isoelectric Point: 4.7477

>NTDB_id=135495 RN86_RS06900 WP_053794513.1 1412203..1412853(+) (scnR) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MYKILVVEDDTTINQVICEFLKESNYSVTPVYDGAEALRQFEEETFDLVILDMMLPSVSGLDVLKEIRKTSQIPVMILTA
LDDEYTQLVSFNHLISDYVTKPFSPLILVKRIENILRRTAVYSEIVIGDLRVVLEDCTIFWQGEKLALTKKEYEILEVLA
KRKGHLVTRDQLMNTIWGYSELDSRVLDNHIKNIRKKVPGIPLSTITGMGYQLGGD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=135495 RN86_RS06900 WP_053794513.1 1412203..1412853(+) (scnR) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGTATAAGATTTTGGTCGTAGAAGATGATACTACTATCAACCAAGTCATATGTGAATTTTTAAAAGAAAGTAACTACAG
TGTTACACCGGTTTATGATGGGGCAGAGGCTCTACGTCAGTTTGAAGAAGAGACTTTTGATTTAGTCATTTTAGATATGA
TGTTGCCATCCGTTAGTGGTTTAGATGTCCTCAAGGAAATCCGTAAGACATCGCAGATCCCAGTCATGATTTTAACTGCT
CTAGATGATGAATATACTCAGCTAGTGAGTTTTAATCACTTGATCAGCGATTATGTGACTAAGCCTTTTTCACCCCTCAT
TTTGGTGAAAAGAATAGAAAATATTTTACGACGAACTGCCGTTTATTCTGAAATTGTCATCGGCGACTTGCGCGTGGTTT
TAGAGGATTGTACGATTTTCTGGCAAGGAGAAAAGCTAGCTCTGACCAAGAAGGAGTATGAAATTCTAGAAGTTCTTGCG
AAACGTAAGGGCCATTTAGTGACTCGGGATCAGCTTATGAATACTATTTGGGGTTATAGTGAGTTAGATAGTCGTGTCTT
GGACAATCATATCAAGAATATTCGCAAGAAAGTTCCTGGAATTCCTTTGTCAACCATTACTGGTATGGGCTATCAATTGG
GTGGAGATTAG

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(143-213)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

38.938

100

0.407
  micA Streptococcus pneumoniae Cp1015

37.391

100

0.398
  vicR Streptococcus mutans UA159

36.797

100

0.394