Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   RN86_RS05250 Genome accession   NZ_CP012648
Coordinates   1071460..1073442 (+) Length   660 a.a.
NCBI ID   WP_053794410.1    Uniprot ID   -
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1066460..1078442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS05240 (RN86_05235) amiA 1067075..1069036 (+) 1962 WP_053794408.1 peptide ABC transporter substrate-binding protein Regulator
  RN86_RS05245 (RN86_05240) amiA3 1069252..1071210 (+) 1959 WP_053794409.1 peptide ABC transporter substrate-binding protein Regulator
  RN86_RS05250 (RN86_05245) amiA 1071460..1073442 (+) 1983 WP_053794410.1 peptide ABC transporter substrate-binding protein Regulator
  RN86_RS05255 (RN86_05250) amiA 1073719..1075710 (+) 1992 WP_053794411.1 peptide ABC transporter substrate-binding protein Regulator
  RN86_RS05260 (RN86_05255) amiC 1075775..1077271 (+) 1497 WP_048777855.1 ABC transporter permease Regulator
  RN86_RS05265 (RN86_05260) amiD 1077271..1078197 (+) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73494.90 Da        Isoelectric Point: 5.0817

>NTDB_id=135477 RN86_RS05250 WP_053794410.1 1071460..1073442(+) (amiA) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MKKRNVLAMAGVTILAAGVLAACSSSKSGSSNTNTNFTYVYQTDPETLDYTLSSKTSTHEITSNVIDGLLENDQYGNLVP
SLAEDWSVSKDGLTYTYKLRKGVKWYTSDGEEYADVTAKDFVTGLKHAVDKKSEALYMVENSIKGLDAYIKGETKDFSTV
GIKAVDDHTLQFTLEHPESFWNSKLTMGVLFPVNEEFLKSKGDKFGQATDPTSILYNGPFLLKGITSKSSIEFAKNQNYW
DKDNVHVDNVKLAFYDGQDQESLIRGFKDGSYSKARVYPRSSNYASVEKEYKDNIIFSPQGSSTFTVFTNIDRQSYNHTS
KTTDAQKTSTKKAILNKDFRQALNFAYDRKAYSDQVNGEEGALKSIRNLYVPPTFVQVGDKNFGDVVKEDVVKYGDEWKD
VDFSDATNGLYNPEKAKAEFAKAKEALQAEGVEFPIHLDIPTIQTNTLIVKRAQSLKQSIEKSLGTDNVVVDIQMLSQED
VNNITYYAPNAAALDWDITDQLGWTPDFQDPSSYLEILHPETGDNTKSFLGFEAGSGNAAAKQIGMDEFGKLLDEAAAEK
TDTTKRYEKYAAAQAWLTDSSILIPSTSNGGGAGVTRVVPFTAAFGWTGNKSDGAFLYKYIKLQDKPVTKKEYQEAEKKW
IKEKEESNKKAQEELEKHIK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=135477 RN86_RS05250 WP_053794410.1 1071460..1073442(+) (amiA) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGAAGAAACGCAATGTTTTAGCCATGGCTGGTGTAACCATACTTGCTGCTGGTGTCTTAGCTGCCTGCTCTAGTTCTAA
GTCTGGATCATCAAACACAAATACTAATTTTACTTATGTTTATCAAACAGACCCAGAAACTTTGGACTATACCTTATCAA
GTAAGACCTCTACCCATGAAATCACATCTAATGTCATTGATGGTTTGCTTGAAAATGACCAATATGGTAATCTTGTTCCA
TCACTTGCAGAAGACTGGAGTGTATCTAAGGACGGCCTGACTTACACTTACAAATTGCGTAAGGGAGTTAAATGGTATAC
ATCCGATGGCGAAGAATATGCAGATGTAACTGCTAAGGATTTTGTGACAGGTTTGAAACATGCTGTAGATAAAAAATCAG
AAGCTCTTTATATGGTGGAAAATTCCATCAAAGGATTGGATGCCTATATCAAAGGGGAAACAAAGGACTTCTCAACAGTA
GGGATTAAAGCTGTCGATGATCATACCTTGCAGTTCACTTTGGAACACCCAGAAAGCTTCTGGAATTCTAAATTAACAAT
GGGTGTCCTATTCCCTGTTAATGAAGAGTTCTTGAAATCTAAAGGAGACAAATTCGGTCAAGCTACTGACCCGACAAGTA
TCCTTTATAATGGTCCTTTCTTGTTGAAAGGTATAACTTCGAAGTCCTCTATCGAGTTTGCGAAAAATCAGAACTATTGG
GATAAAGACAATGTTCATGTAGACAATGTTAAATTAGCTTTCTATGATGGGCAAGACCAAGAATCCTTAATTCGTGGCTT
TAAAGACGGCTCTTATAGTAAGGCACGTGTTTATCCTCGTAGTTCAAACTATGCGTCTGTAGAGAAAGAATATAAAGACA
ATATTATCTTTAGTCCTCAAGGTTCATCTACTTTCACTGTTTTCACAAACATTGATCGCCAAAGTTATAATCATACTTCT
AAAACGACAGATGCACAAAAAACATCTACCAAAAAAGCTATCTTAAACAAAGACTTCCGTCAGGCTTTGAACTTTGCTTA
TGACCGTAAGGCCTATTCTGACCAAGTGAACGGTGAAGAAGGAGCCCTTAAATCTATTCGTAACCTCTATGTCCCACCAA
CATTTGTTCAAGTTGGTGACAAGAATTTTGGAGATGTCGTAAAAGAAGATGTTGTCAAATACGGCGATGAGTGGAAAGAT
GTTGATTTCTCAGATGCGACTAACGGTCTCTACAATCCAGAGAAAGCAAAAGCAGAATTCGCCAAAGCAAAAGAAGCCCT
TCAAGCAGAAGGCGTGGAATTCCCAATTCATCTGGACATACCAACAATCCAGACCAATACTCTTATTGTAAAACGGGCTC
AATCTTTGAAACAGTCTATTGAAAAGAGTTTAGGAACAGACAATGTTGTGGTTGATATTCAAATGTTATCCCAAGAAGAT
GTTAATAATATAACTTACTACGCTCCAAATGCAGCTGCTTTGGATTGGGATATCACAGACCAACTTGGCTGGACTCCTGA
CTTCCAAGATCCGTCATCCTACTTAGAGATTCTACACCCAGAAACAGGTGATAACACGAAGTCTTTCCTTGGATTTGAAG
CTGGTAGTGGAAATGCTGCTGCTAAACAAATCGGCATGGATGAATTTGGAAAATTGTTGGATGAAGCTGCTGCTGAAAAG
ACAGATACAACAAAACGCTATGAAAAATATGCAGCTGCTCAAGCTTGGTTGACAGATAGTTCGATCTTGATTCCAAGCAC
TTCAAATGGTGGAGGAGCTGGTGTAACTAGGGTTGTGCCATTCACTGCTGCTTTTGGTTGGACAGGTAACAAATCAGATG
GTGCCTTCCTCTACAAATACATTAAGCTTCAAGATAAACCAGTAACGAAGAAAGAGTATCAAGAAGCTGAGAAGAAATGG
ATTAAAGAAAAAGAAGAATCTAACAAAAAAGCTCAAGAAGAACTTGAGAAGCATATAAAATAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

60.666

100

0.608
  amiA3 Streptococcus thermophilus LMD-9

59.758

100

0.598
  amiA3 Streptococcus thermophilus LMG 18311

59.607

100

0.597