Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RG35_RS16070 Genome accession   NZ_CP010137
Coordinates   3080166..3080795 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain D2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3075166..3085795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG35_RS16055 (RG35_15195) helD 3075408..3077462 (-) 2055 WP_001295354.1 DNA helicase IV -
  RG35_RS16060 (RG35_15200) yccF 3077585..3078031 (+) 447 WP_001261235.1 YccF domain-containing protein -
  RG35_RS16065 (RG35_15205) yccS 3078041..3080203 (+) 2163 WP_000875061.1 YccS family putative transporter -
  RG35_RS16070 (RG35_15210) sxy/tfoX 3080166..3080795 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RG35_RS16075 (RG35_15215) sulA 3081014..3081523 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RG35_RS16085 (RG35_15225) ompA 3081880..3082920 (+) 1041 WP_000750416.1 porin OmpA -
  RG35_RS16090 (RG35_15230) matP 3082996..3083448 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RG35_RS16095 (RG35_15235) ycbZ 3083634..3085394 (+) 1761 WP_073544304.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=134512 RG35_RS16070 WP_000839153.1 3080166..3080795(-) (sxy/tfoX) [Escherichia coli strain D2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=134512 RG35_RS16070 WP_000839153.1 3080166..3080795(-) (sxy/tfoX) [Escherichia coli strain D2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment