Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LF65_RS28200 Genome accession   NZ_CP010086
Coordinates   6454147..6454596 (-) Length   149 a.a.
NCBI ID   WP_012061234.1    Uniprot ID   A0A0B5QVQ9
Organism   Clostridium beijerinckii strain NCIMB 14988     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6449147..6459596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF65_RS28180 (LF65_05761) rplI 6450953..6451399 (-) 447 WP_017213161.1 50S ribosomal protein L9 -
  LF65_RS28185 (LF65_05762) - 6451403..6453343 (-) 1941 WP_041900769.1 DHH family phosphoesterase -
  LF65_RS28190 (LF65_05763) - 6453364..6453684 (-) 321 WP_012061232.1 MazG-like family protein -
  LF65_RS28195 (LF65_05764) rpsR 6453862..6454122 (-) 261 WP_012061233.1 30S ribosomal protein S18 -
  LF65_RS28200 (LF65_05765) ssbA 6454147..6454596 (-) 450 WP_012061234.1 single-stranded DNA-binding protein Machinery gene
  LF65_RS28205 (LF65_05766) rpsF 6454610..6454897 (-) 288 WP_012061235.1 30S ribosomal protein S6 -
  LF65_RS28210 (LF65_05767) - 6454999..6455193 (-) 195 WP_012061236.1 DUF951 domain-containing protein -
  LF65_RS28215 (LF65_05768) - 6455193..6456116 (-) 924 WP_012061237.1 mechanosensitive ion channel family protein -
  LF65_RS28220 (LF65_05769) - 6456132..6456374 (-) 243 WP_041900771.1 DUF3343 domain-containing protein -
  LF65_RS28225 (LF65_05770) - 6456543..6457190 (+) 648 WP_017210038.1 LysE family translocator -
  LF65_RS28230 (LF65_05771) - 6457206..6458357 (+) 1152 WP_041900773.1 aminotransferase class V-fold PLP-dependent enzyme -
  LF65_RS28235 (LF65_05772) yyaC 6458524..6459111 (+) 588 WP_041900776.1 spore protease YyaC -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 15891.51 Da        Isoelectric Point: 4.5778

>NTDB_id=134093 LF65_RS28200 WP_012061234.1 6454147..6454596(-) (ssbA) [Clostridium beijerinckii strain NCIMB 14988]
MNKVVLIGRLTKDPELRFTPGSGAAVTTLTLAVDKYNTKTGQREADFVPVVVWGKQAESTANYMSKGSQVAISGRIQTRS
YDAKDGTKRYVTEVVADQFGGVEFLGSKGSNSSGNSFGNSNEYSAPANDAFSGGFEEDITPVDDGDMPF

Nucleotide


Download         Length: 450 bp        

>NTDB_id=134093 LF65_RS28200 WP_012061234.1 6454147..6454596(-) (ssbA) [Clostridium beijerinckii strain NCIMB 14988]
ATGAATAAAGTAGTTCTAATCGGAAGATTAACAAAAGATCCAGAACTAAGATTTACTCCAGGAAGTGGAGCAGCAGTAAC
AACCTTAACATTAGCAGTTGATAAATATAATACAAAAACTGGCCAAAGAGAAGCAGATTTTGTTCCTGTAGTAGTATGGG
GCAAACAAGCTGAAAGTACTGCTAATTACATGAGTAAAGGTAGCCAAGTGGCTATTAGTGGTAGAATCCAAACCAGAAGT
TATGATGCGAAAGACGGAACTAAGAGATATGTTACCGAAGTTGTAGCAGATCAATTTGGTGGAGTTGAATTCCTAGGAAG
TAAAGGAAGTAATTCATCAGGAAATAGTTTTGGTAATAGCAATGAATATTCAGCACCAGCGAATGATGCATTCAGTGGTG
GATTTGAAGAGGATATAACTCCGGTAGATGACGGAGATATGCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B5QVQ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

41.143

100

0.483
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.778

72.483

0.383
  ssbB Streptococcus sobrinus strain NIDR 6715-7

53.398

69.128

0.369

Multiple sequence alignment