Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   AMD29_RS06845 Genome accession   NZ_CP012419
Coordinates   1313296..1313736 (-) Length   146 a.a.
NCBI ID   WP_000431168.1    Uniprot ID   R4Z9I5
Organism   Streptococcus agalactiae strain SG-M1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1308296..1318736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD29_RS06830 (AMD29_06830) - 1308954..1309580 (-) 627 WP_000449636.1 GTP pyrophosphokinase family protein -
  AMD29_RS06835 (AMD29_06835) rcrQ 1309688..1311442 (-) 1755 WP_000851080.1 ABC transporter ATP-binding protein Regulator
  AMD29_RS06840 (AMD29_06840) rcrP 1311432..1313249 (-) 1818 WP_000481818.1 ABC transporter ATP-binding protein Regulator
  AMD29_RS06845 (AMD29_06845) rcrR 1313296..1313736 (-) 441 WP_000431168.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  AMD29_RS06850 (AMD29_06850) - 1314005..1316077 (+) 2073 WP_000726914.1 surface-anchored 5'-nucleotidase -
  AMD29_RS06855 (AMD29_06855) - 1316114..1316524 (-) 411 WP_000594936.1 peptide deformylase -
  AMD29_RS06860 (AMD29_06860) gdhA 1316594..1317943 (-) 1350 WP_017647818.1 NADP-specific glutamate dehydrogenase -
  AMD29_RS06865 (AMD29_06865) - 1318111..1318620 (+) 510 WP_000870955.1 HdeD family acid-resistance protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16968.84 Da        Isoelectric Point: 9.8384

>NTDB_id=133676 AMD29_RS06845 WP_000431168.1 1313296..1313736(-) (rcrR) [Streptococcus agalactiae strain SG-M1]
MENPLQKARILVNQLEKYLDRYAKEYDVEHLAGPQGHLVMHLYKHPDKDMSIKDAEEILHISKSVASNLVKRMEKNGFIA
IVPSKTDKRVKYLYLTHLGKQKATQFEIFLEKLHSTMLAGITKEEIRTTKKVIRTLAKNMAMEDFD

Nucleotide


Download         Length: 441 bp        

>NTDB_id=133676 AMD29_RS06845 WP_000431168.1 1313296..1313736(-) (rcrR) [Streptococcus agalactiae strain SG-M1]
ATGGAGAATCCTCTTCAAAAAGCACGAATACTTGTTAATCAACTTGAAAAGTATTTAGATCGTTATGCAAAAGAGTATGA
TGTTGAACATTTAGCGGGTCCACAAGGACACTTAGTGATGCATCTCTATAAACATCCTGACAAGGATATGTCTATAAAAG
ATGCTGAAGAAATTTTACACATCTCTAAGTCTGTAGCTTCTAATTTGGTAAAACGGATGGAAAAAAATGGATTTATTGCG
ATTGTTCCATCTAAGACAGATAAGCGTGTGAAATACCTTTATTTGACTCATCTAGGTAAACAAAAGGCTACACAATTTGA
AATTTTCTTAGAAAAATTGCACAGTACCATGTTAGCAGGTATTACTAAAGAAGAGATACGTACTACCAAAAAGGTTATTA
GAACATTAGCTAAAAATATGGCGATGGAAGATTTTGATTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 7DVS

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

95.89

0.411