Detailed information NTG0133674

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: QR90_RS05115
• Genome accession: NZ_CP010028
• Coordinates: 1074971..1076191 (-)
• Length: 406 a.a.
• NCBI ID: WP_039682737.1
• Uniprot ID: A0A0A7KH98
• Organism: Deinococcus radiopugnans strain DY59
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1069971..1081191

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QR90_RS05100 (QR90_05100)	-	1070395..1071462 (-)	1068	WP_039682732.1	ATP-binding protein	-
QR90_RS05105 (QR90_05105)	-	1071462..1073558 (-)	2097	WP_039682735.1	DDE-type integrase/transposase/recombinase	-
QR90_RS05110 (QR90_05110)	-	1073558..1074295 (-)	738	WP_052195265.1	TnsA-like heteromeric transposase endonuclease subunit	-
QR90_RS05115 (QR90_05115)	pilC	1074971..1076191 (-)	1221	WP_039682737.1	type II secretion system F family protein	Machinery gene
QR90_RS05120 (QR90_05120)	-	1076248..1076886 (+)	639	WP_052195266.1	L-threonylcarbamoyladenylate synthase	-
QR90_RS05125 (QR90_05125)	scpB	1076897..1077460 (+)	564	WP_245616425.1	SMC-Scp complex subunit ScpB	-
QR90_RS05130 (QR90_05130)	-	1077610..1078368 (+)	759	WP_039682739.1	DUF4388 domain-containing protein	-
QR90_RS05135 (QR90_05135)	aguB	1078413..1079318 (+)	906	WP_039682741.1	N-carbamoylputrescine amidase	-
QR90_RS05140 (QR90_05140)	-	1079425..1080420 (-)	996	WP_081994914.1	C40 family peptidase	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 44326.12 Da
• Isoelectric Point: 9.5172

>NTDB_id=133674 QR90_RS05115 WP_039682737.1 1074971..1076191(-) (pilC) [Deinococcus radiopugnans strain DY59]
MAVFEYRARDRSGKVLKSQMEAETAAQVRDTLRAKNLMIVEIKAPKSGLNADIKIPFLDDRPPNLKQVSIFSKQLATLIN
AGVPLVQSLAVLQGQIEHKGFQKTVKNLRSEVEAGTPLSEAIAKYPKVFNRLYVNLVRAGETSGTLDSVLERIAAFQEKE
LALRGKIKSALTYPVVVLVFAILITYFLLTTIVPQFAGILAQLNAPLPFITKMLMAVSDFLKHSTWLIVVFGVILTFAYR
WVYKTPKGRTTIDDIKLKLPVFGNLTQKSAIASFARTFGLLISSGVNIIEALEITKGTADNAIVEDTIENAKNVVMVGEQ
MSSSLATSKVFPPMVVSMISIGEETGALDSMLSKVGDFYDREVDEAVDSMTAAIEPIMIVFLGGIVGTIVAGMFLPMFSI
IGQLSQ

Nucleotide

• Length: 1221 bp

>NTDB_id=133674 QR90_RS05115 WP_039682737.1 1074971..1076191(-) (pilC) [Deinococcus radiopugnans strain DY59]
ATGGCCGTCTTCGAATACCGCGCACGTGACCGCTCTGGCAAAGTGCTCAAATCCCAGATGGAGGCCGAGACGGCGGCCCA
GGTCCGCGACACCCTGCGCGCCAAAAACCTGATGATCGTCGAGATCAAGGCCCCCAAGAGCGGCCTGAACGCCGACATTA
AAATTCCCTTCCTGGACGACCGCCCGCCCAATCTCAAGCAGGTGTCGATCTTCAGCAAGCAACTCGCCACGCTGATCAAC
GCCGGGGTGCCGCTGGTGCAGTCGCTGGCCGTGCTGCAGGGCCAGATCGAGCACAAGGGGTTTCAGAAGACCGTCAAGAA
CCTGCGCAGCGAGGTAGAGGCCGGGACCCCCCTGAGCGAGGCCATCGCCAAATACCCCAAAGTGTTCAACCGCCTGTACG
TCAATCTGGTGCGCGCCGGGGAAACCAGCGGCACGCTGGACTCGGTGCTGGAGCGCATCGCCGCCTTTCAGGAAAAGGAA
CTGGCGCTGCGCGGCAAGATCAAGAGCGCGCTGACCTACCCGGTGGTGGTGCTGGTCTTCGCCATCCTGATCACCTACTT
CCTGCTCACCACCATCGTGCCGCAGTTTGCGGGCATCCTGGCGCAGCTCAACGCGCCGCTGCCGTTCATCACCAAGATGC
TGATGGCCGTGTCGGACTTCCTAAAGCACTCGACGTGGCTGATCGTGGTGTTCGGCGTCATCCTCACCTTCGCCTACCGC
TGGGTCTACAAGACGCCCAAGGGGCGCACCACCATCGACGACATCAAGCTCAAGCTGCCGGTGTTCGGCAACCTGACCCA
GAAAAGCGCCATCGCGTCGTTCGCGCGCACCTTCGGCCTGCTGATCAGCAGCGGCGTGAACATCATCGAGGCGCTGGAAA
TCACCAAGGGCACGGCGGACAACGCCATTGTCGAGGACACCATCGAAAACGCCAAAAACGTCGTGATGGTGGGCGAGCAG
ATGAGTTCGAGCCTCGCGACCAGCAAGGTCTTTCCGCCGATGGTGGTCAGCATGATCTCGATTGGCGAGGAAACCGGCGC
GCTGGACTCGATGCTCTCCAAAGTGGGCGACTTCTACGACCGCGAGGTCGATGAGGCCGTCGACAGCATGACGGCGGCCA
TCGAGCCGATCATGATCGTCTTTCTGGGCGGCATCGTGGGCACCATCGTCGCGGGGATGTTCCTGCCGATGTTCAGCATC
ATCGGCCAGCTCAGCCAATAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

• Type II secretion system (T2SS), protein F (T2SSF) (274-396)

3D structure

• AlphaFold DB: A0A0A7KH98

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	57.882	100	0.579