Detailed information    

insolico Bioinformatically predicted

Overview


Name   luxO   Type   Regulator
Locus tag   FORC9_RS07560 Genome accession   NZ_CP009984
Coordinates   1634685..1636178 (+) Length   497 a.a.
NCBI ID   WP_060531746.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_009     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context


Location: 1629685..1641178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC9_RS07545 (FORC9_1470) - 1630709..1631401 (+) 693 WP_043877164.1 tyrosine-protein kinase family protein -
  FORC9_RS07550 (FORC9_1471) - 1631398..1632216 (+) 819 WP_081036239.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  FORC9_RS07555 (FORC9_1472) - 1632240..1634528 (+) 2289 WP_060531744.1 ATP-binding protein -
  FORC9_RS07560 (FORC9_1473) luxO 1634685..1636178 (+) 1494 WP_060531746.1 sigma-54-dependent transcriptional regulator Regulator
  FORC9_RS07565 (FORC9_1474) - 1636171..1637304 (+) 1134 WP_060531747.1 glycosyltransferase -
  FORC9_RS07570 (FORC9_1475) - 1637412..1638605 (+) 1194 WP_060531749.1 glycosyltransferase -
  FORC9_RS07575 (FORC9_1476) - 1638602..1639780 (+) 1179 WP_060531751.1 glycosyltransferase family 4 protein -

Sequence


Protein


Download         Length: 497 a.a.        Molecular weight: 55829.91 Da        Isoelectric Point: 6.5961

>NTDB_id=133468 FORC9_RS07560 WP_060531746.1 1634685..1636178(+) (luxO) [Vibrio vulnificus strain FORC_009]
MRAKVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERNTPQLVILDLKLPDMSGEDVLDWINQNDVPTAVIIA
TAHGSVDIAVSLMSKGAEDFLEKPIKADRLKTSIAVHLKRAKLEHLVENMQSRFDRPRYHGFIGACLPMQAVYKTIDSVA
PTTASVFINGESGTGKEVCAEAIHKQSLRKEQPFIAINCGAIPRDLMESEIFGHLKGAFTGATTDRKGAAMLANGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGGSKEIKVDVRIICATNREPLKEVEEGRFREDLYYRVHVVPIEMPPLRERGNDI
VELANHFLKTYAKEDGKKFNSISKEAQSILKKYNWPGNVRQLQNIIRNIVVLNDDNQLNVEHLPAQLTTKPQTVKEPAKL
STPPQPAQAVIHEMHNGHEALNHHSFERQTSMANPLTHNAFHHSDGSIRPMWQIEREAIQNAIAFCDGNVISAAVMLELS
PSTVYRKKQAWEAEENA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=133468 FORC9_RS07560 WP_060531746.1 1634685..1636178(+) (luxO) [Vibrio vulnificus strain FORC_009]
ATGCGAGCAAAAGTACTGTTAGTCGAGGATTCCACTTCACTTGCCATTTTATATAAGCAATACGTTAAAGATGAGCCCTA
TGATATTTTTCACGTAGAAACCGGACGTGACGCGATTCAGTTTATTGAGCGCAATACGCCGCAACTGGTAATTTTAGATC
TCAAGTTGCCCGATATGTCCGGGGAAGATGTGCTCGACTGGATCAACCAAAACGATGTTCCGACCGCGGTTATCATTGCC
ACCGCTCATGGTTCCGTCGACATCGCCGTCAGCTTAATGAGCAAAGGGGCGGAAGATTTTCTCGAAAAGCCAATCAAAGC
CGACCGTTTGAAAACATCCATTGCCGTTCATCTAAAACGCGCCAAGTTAGAGCATTTGGTTGAGAACATGCAATCTCGCT
TCGACAGACCACGTTATCATGGCTTTATCGGCGCGTGCCTGCCAATGCAGGCCGTTTATAAAACCATTGATTCCGTGGCG
CCAACCACCGCCAGTGTTTTTATCAACGGAGAGAGTGGCACAGGGAAAGAAGTGTGTGCTGAAGCGATCCACAAACAGAG
CCTACGCAAAGAGCAGCCCTTTATCGCAATCAACTGTGGGGCGATTCCTCGTGACTTAATGGAAAGCGAAATCTTTGGTC
ACTTAAAAGGGGCGTTTACTGGAGCGACAACCGATCGCAAAGGTGCAGCAATGCTGGCCAACGGCGGCACGCTATTTCTC
GATGAATTGTGCGAGATGGAACTGGAGATGCAGAAAAAACTGCTGCGTTTTCTTCAGACCGGCACCTTCACCCCACTCGG
CGGCAGTAAAGAAATCAAAGTGGATGTGCGCATCATCTGCGCCACCAATCGCGAACCCCTCAAAGAAGTCGAAGAAGGCC
GTTTTAGGGAAGATCTCTACTATCGTGTCCATGTGGTTCCCATTGAAATGCCGCCACTTAGAGAACGAGGTAACGACATT
GTTGAGCTGGCCAATCACTTCCTCAAAACTTACGCCAAAGAAGACGGCAAAAAATTCAACTCAATCAGCAAAGAAGCTCA
ATCAATACTCAAAAAATACAACTGGCCGGGCAATGTTCGTCAGTTGCAAAACATCATTCGCAACATTGTCGTTCTCAACG
ATGACAACCAACTGAATGTGGAACATTTGCCGGCTCAGCTCACCACCAAACCGCAAACCGTCAAAGAACCCGCTAAACTC
TCAACCCCACCTCAACCTGCTCAAGCGGTCATACACGAGATGCACAACGGACATGAGGCGTTAAACCATCATTCGTTTGA
GAGGCAAACGTCCATGGCCAATCCACTCACCCACAATGCGTTCCACCATTCTGACGGCAGTATCCGTCCAATGTGGCAAA
TCGAACGCGAAGCGATTCAAAACGCTATCGCCTTTTGCGATGGCAACGTGATCAGTGCAGCGGTGATGTTGGAACTAAGC
CCCTCGACGGTGTATCGCAAAAAACAAGCGTGGGAGGCAGAAGAAAATGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

50.617

97.787

0.495

  pilR Acinetobacter baumannii strain A118

37.014

98.39

0.364


Multiple sequence alignment