Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | FORC8_RS02865 | Genome accession | NZ_CP009982 |
| Coordinates | 579307..580176 (-) | Length | 289 a.a. |
| NCBI ID | WP_005493974.1 | Uniprot ID | A0A249W3M2 |
| Organism | Vibrio parahaemolyticus strain FORC_008 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 574307..585176
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC8_RS02830 (FORC8_0479) | rpsP | 575272..575520 (+) | 249 | WP_005379962.1 | 30S ribosomal protein S16 | - |
| FORC8_RS02835 (FORC8_0480) | rimM | 575549..576097 (+) | 549 | WP_005462552.1 | ribosome maturation factor RimM | - |
| FORC8_RS02840 (FORC8_0481) | trmD | 576125..576868 (+) | 744 | WP_005462562.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| FORC8_RS02845 (FORC8_0482) | rplS | 576910..577263 (+) | 354 | WP_005462554.1 | 50S ribosomal protein L19 | - |
| FORC8_RS02850 (FORC8_0483) | yacG | 577661..577855 (-) | 195 | WP_005462546.1 | DNA gyrase inhibitor YacG | - |
| FORC8_RS02855 (FORC8_0484) | zapD | 577924..578664 (-) | 741 | WP_023624252.1 | cell division protein ZapD | - |
| FORC8_RS02860 (FORC8_0485) | coaE | 578692..579306 (-) | 615 | WP_025633754.1 | dephospho-CoA kinase | - |
| FORC8_RS02865 (FORC8_0486) | pilD | 579307..580176 (-) | 870 | WP_005493974.1 | prepilin peptidase | Machinery gene |
| FORC8_RS02870 (FORC8_0487) | pilC | 580241..581464 (-) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| FORC8_RS02875 (FORC8_0488) | pilB | 581488..583173 (-) | 1686 | WP_020835398.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FORC8_RS02880 (FORC8_0489) | pilA | 583173..583577 (-) | 405 | WP_015297250.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| FORC8_RS02885 (FORC8_0490) | nadC | 583841..584728 (-) | 888 | WP_025442237.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32377.43 Da Isoelectric Point: 7.1971
>NTDB_id=133415 FORC8_RS02865 WP_005493974.1 579307..580176(-) (pilD) [Vibrio parahaemolyticus strain FORC_008]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWASLIWGDQILSWYFTSILGV
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWASLIWGDQILSWYFTSILGV
Nucleotide
Download Length: 870 bp
>NTDB_id=133415 FORC8_RS02865 WP_005493974.1 579307..580176(-) (pilD) [Vibrio parahaemolyticus strain FORC_008]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTGAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGCAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGAGTGTAA
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTGAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGCAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGAGTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
88.927 |
100 |
0.889 |
| pilD | Vibrio cholerae strain A1552 |
73.611 |
99.654 |
0.734 |
| pilD | Acinetobacter baumannii D1279779 |
52.239 |
92.734 |
0.484 |
| pilD | Acinetobacter nosocomialis M2 |
51.866 |
92.734 |
0.481 |
| pilD | Neisseria gonorrhoeae MS11 |
47.101 |
95.502 |
0.45 |