Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RPPX_RS16955 Genome accession   NZ_CP009974
Coordinates   3809430..3811646 (+) Length   738 a.a.
NCBI ID   WP_026031863.1    Uniprot ID   A0AA34S0M2
Organism   Pseudomonas putida S12     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3804430..3816646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPPX_RS16935 (RPPX_16935) - 3806306..3806929 (+) 624 WP_014591940.1 glutathione S-transferase -
  RPPX_RS16940 (RPPX_16940) - 3807063..3807995 (+) 933 WP_010952922.1 ABC transporter ATP-binding protein -
  RPPX_RS16945 (RPPX_16945) - 3807992..3808771 (+) 780 WP_003247128.1 ABC transporter permease -
  RPPX_RS16950 (RPPX_16950) - 3808781..3809287 (-) 507 Protein_3386 DUF2062 domain-containing protein -
  RPPX_RS16955 (RPPX_16955) comA 3809430..3811646 (+) 2217 WP_026031863.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RPPX_RS16960 (RPPX_16960) exbB 3811798..3812433 (+) 636 WP_026031862.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RPPX_RS16965 (RPPX_16965) - 3812430..3812864 (+) 435 WP_014591937.1 ExbD/TolR family protein -
  RPPX_RS16970 (RPPX_16970) lpxK 3812864..3813865 (+) 1002 WP_014591936.1 tetraacyldisaccharide 4'-kinase -
  RPPX_RS16975 (RPPX_16975) - 3813910..3814095 (+) 186 WP_003247142.1 Trm112 family protein -
  RPPX_RS16980 (RPPX_16980) kdsB 3814092..3814856 (+) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RPPX_RS16985 (RPPX_16985) - 3814856..3815320 (+) 465 WP_014591934.1 low molecular weight protein-tyrosine-phosphatase -
  RPPX_RS16990 (RPPX_16990) murB 3815317..3816336 (+) 1020 WP_019437412.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79476.37 Da        Isoelectric Point: 10.2959

>NTDB_id=133293 RPPX_RS16955 WP_026031863.1 3809430..3811646(+) (comA) [Pseudomonas putida S12]
MRTGMFALALGLLCLGFLPALPSVGWLITLAACAVGSLFTRVWPLGWFLLGLCWACGSAQQALDDRLAAGLEGRTLWLEG
RVAGLPARTAQGVRFELEAPRSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPDGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVAGGWRDALRQRLLMVEANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGVFFPLLVALVAVLVFEPL
AALLPGFWLSFAAVATLIYCFSARLGGWRPWQAWTRAQWVIAVGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLMLPLAGVGEALLWLAGGLLDVLFRGLALVAQQRPAWVPPALPLWAWLLVCLGALLILLPRGVPLRGLGGVMLLALW
VPREPVPFGQVEVWQLDVGQGLAVLLRTRHHSLLYDAGPARGESDLGERVVLPTLRKLGVGGLDVMVISHAHADHAGGAG
AIARGLPIKRIIGGEALVDIPLQPCASGEQWDWDGVRFSLWRWVDGQSSNDRSCVLLVEAQGERLLLAGDMEAAAERAWL
ADTEVPRIDWLQAPHHGSRSSSTEAFVRATAPRGVLISRGRNNSFGHPHVQVVERYGRHGVVMHDTAVEGALRLVLGRHG
EVEGVRRQRRFWRDVGGG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=133293 RPPX_RS16955 WP_026031863.1 3809430..3811646(+) (comA) [Pseudomonas putida S12]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTTCCTGCATTGCCATCGGTCGGATGGTT
GATAACCCTGGCAGCCTGCGCTGTCGGCAGCCTGTTTACCCGCGTCTGGCCACTGGGTTGGTTTCTGCTGGGCTTGTGTT
GGGCGTGCGGGTCTGCTCAGCAGGCCCTTGATGATCGTCTGGCTGCCGGCCTGGAGGGGCGCACCTTGTGGCTGGAAGGG
CGGGTGGCGGGTTTGCCGGCCCGCACAGCACAAGGCGTGCGTTTCGAACTGGAAGCGCCACGCTCGCGGCGGGCCGAACT
GCCTCAGCGCTTGCAACTGAGCTGGTTCGACGGGCCGCCGCTGCGGGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGACGGGCTGCTGAACCCGCATGGGCCCGACCGTGAAGCGCAGTTGCTGGCGCGACGGGTGGGCGCTACGGGT
ACGGTCAAGGCGGGGCAGTTGCTGGCGCCAGTCGCCGGTGGTTGGCGCGATGCGCTGCGTCAGCGCTTGCTGATGGTCGA
AGCCAATGGCCGACAGGCAGCGCTGGTGGCCCTGGTGCTTGGCGATGGTGCGGGCCTGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATTTCCGGCCAGCACATCGGCCTGGTCGCCGGTTTGCTCTATGGCCTG
GTTGCCGGGCTGGCGCGTTGGGGGCTATGGCCGGCAAGGCTACCGTGGTTACCCTGGGCCTGCGGCCTGGCCATGGCCGC
AGCGCTGGCCTACGGGTGGCTGGCTGGCGGTGGGGTGCCAGTGCAGCGGGCCTGCCTGATGCTAGCCGTGGTGCTGCTCT
GGCGTCTGCGCTTTCGCCACCTTGGCGTTTTTTTTCCGTTGCTGGTTGCACTGGTCGCTGTGCTTGTCTTCGAGCCACTG
GCGGCGTTGCTGCCTGGGTTCTGGCTGTCGTTCGCCGCCGTGGCCACGCTCATCTACTGCTTCAGTGCCCGGTTGGGTGG
TTGGCGGCCCTGGCAGGCCTGGACGCGTGCGCAATGGGTGATCGCCGTCGGCTTGCTGCCGGTGTTGCTGGCCACCGGCT
TGCCGGTGAGCCTCAGTGCGCCGCTGGCCAACCTTGTGGCGGTGCCGTGGGTCAGCCTGGCGGTCTTGCCGTTGGCGTTG
CTGGGCACGCTGATGTTGCCGCTGGCGGGCGTTGGCGAGGCGTTGCTCTGGCTGGCAGGTGGCCTGCTGGATGTGCTGTT
CCGCGGGCTGGCGCTGGTGGCGCAGCAGCGCCCGGCATGGGTGCCGCCGGCCCTGCCGTTGTGGGCCTGGCTGCTGGTAT
GTCTGGGTGCGCTGTTGATTTTGCTGCCCCGTGGTGTGCCGCTGCGCGGGTTGGGAGGGGTGATGCTGCTGGCGCTGTGG
GTGCCCCGGGAGCCGGTGCCGTTCGGCCAGGTCGAGGTCTGGCAGCTGGATGTTGGCCAGGGGTTGGCGGTGCTATTGCG
TACGCGGCATCACAGCCTGCTCTACGATGCCGGGCCGGCCAGGGGGGAAAGCGACTTGGGGGAACGCGTGGTGCTGCCAA
CCTTGCGCAAGCTGGGGGTGGGCGGCCTTGACGTGATGGTGATCAGCCATGCGCATGCCGATCATGCGGGCGGGGCCGGA
GCCATTGCGCGTGGTTTGCCGATCAAGCGGATAATCGGTGGGGAAGCGCTGGTTGATATTCCCTTGCAGCCTTGTGCCAG
TGGCGAGCAATGGGATTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGTGGACGGGCAGAGCAGTAATGACCGTTCCT
GTGTGCTGTTGGTCGAGGCGCAGGGCGAGCGCTTGCTGCTGGCGGGGGATATGGAAGCTGCTGCCGAACGGGCCTGGCTG
GCGGACACTGAAGTGCCGCGTATCGACTGGCTGCAGGCGCCGCATCATGGCAGCCGCAGCTCGTCCACCGAGGCGTTCGT
CCGGGCTACCGCACCGCGCGGGGTATTGATTTCGCGGGGGCGCAACAACAGCTTCGGGCATCCGCACGTGCAGGTGGTCG
AGCGGTATGGGCGGCATGGAGTGGTGATGCATGATACGGCAGTGGAGGGGGCATTGCGGTTGGTGCTGGGGCGGCATGGG
GAGGTTGAGGGTGTGCGCCGACAGCGGCGATTCTGGCGTGATGTTGGTGGTGGCTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(12-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.693

97.425

0.572
  comA Ralstonia pseudosolanacearum GMI1000

34.694

100

0.369

Multiple sequence alignment