Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RPPX_RS16960 Genome accession   NZ_CP009974
Coordinates   3811798..3812433 (+) Length   211 a.a.
NCBI ID   WP_026031862.1    Uniprot ID   A0AA34WU07
Organism   Pseudomonas putida S12     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3806798..3817433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPPX_RS16940 (RPPX_16940) - 3807063..3807995 (+) 933 WP_010952922.1 ABC transporter ATP-binding protein -
  RPPX_RS16945 (RPPX_16945) - 3807992..3808771 (+) 780 WP_003247128.1 ABC transporter permease -
  RPPX_RS16950 (RPPX_16950) - 3808781..3809287 (-) 507 Protein_3386 DUF2062 domain-containing protein -
  RPPX_RS16955 (RPPX_16955) comA 3809430..3811646 (+) 2217 WP_026031863.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RPPX_RS16960 (RPPX_16960) exbB 3811798..3812433 (+) 636 WP_026031862.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RPPX_RS16965 (RPPX_16965) - 3812430..3812864 (+) 435 WP_014591937.1 ExbD/TolR family protein -
  RPPX_RS16970 (RPPX_16970) lpxK 3812864..3813865 (+) 1002 WP_014591936.1 tetraacyldisaccharide 4'-kinase -
  RPPX_RS16975 (RPPX_16975) - 3813910..3814095 (+) 186 WP_003247142.1 Trm112 family protein -
  RPPX_RS16980 (RPPX_16980) kdsB 3814092..3814856 (+) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RPPX_RS16985 (RPPX_16985) - 3814856..3815320 (+) 465 WP_014591934.1 low molecular weight protein-tyrosine-phosphatase -
  RPPX_RS16990 (RPPX_16990) murB 3815317..3816336 (+) 1020 WP_019437412.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22889.20 Da        Isoelectric Point: 7.3616

>NTDB_id=133294 RPPX_RS16960 WP_026031862.1 3811798..3812433(+) (exbB) [Pseudomonas putida S12]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLASGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVIGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=133294 RPPX_RS16960 WP_026031862.1 3811798..3812433(+) (exbB) [Pseudomonas putida S12]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAACGCCTGTGGACCTTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTATGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCCGATTCGCCACTGGGTGAAATCCTCGCGGCGGGCCTGGCCAAT
TCGCGTCACGGTCGGGAGATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCATGAACTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCGCCTCTGCTCGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTGCTGGCCAGTGGCATCTCCAAGGCCCTGGTCACCACTGCG
GCTGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAACTGGTGATCGGCAT
GGAGCAGGAGGCGATCAAGTTGGTGGAAGTGATCCAGGGTGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82

Multiple sequence alignment