Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AKN41_RS18205 Genome accession   NZ_CP012376
Coordinates   3694077..3694709 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain GE3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3689077..3699709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKN41_RS18180 (AKN41_3655) yheS 3689246..3691159 (+) 1914 WP_000634798.1 ABC transporter ATP-binding protein -
  AKN41_RS18185 (AKN41_3656) yheT 3691159..3692181 (+) 1023 WP_000057405.1 hydrolase -
  AKN41_RS18190 (AKN41_3657) yheU 3692175..3692393 (+) 219 WP_000907085.1 YheU family protein -
  AKN41_RS18195 (AKN41_3658) prkB 3692447..3693316 (+) 870 WP_001274680.1 phosphoribulokinase -
  AKN41_RS18200 (AKN41_3659) yhfA 3693371..3693775 (-) 405 WP_001148908.1 OsmC family protein -
  AKN41_RS18205 (AKN41_3660) crp 3694077..3694709 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  AKN41_RS18210 (AKN41_3661) yhfK 3694760..3696850 (+) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  AKN41_RS18215 (AKN41_3662) argD 3696917..3698137 (-) 1221 WP_000963785.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AKN41_RS18220 (AKN41_3663) pabA 3698223..3698786 (-) 564 WP_149032414.1 aminodeoxychorismate synthase component 2 -
  AKN41_RS18225 (AKN41_3664) fic 3698818..3699420 (-) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  AKN41_RS18230 yhfG 3699410..3699577 (-) 168 WP_000736860.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=133133 AKN41_RS18205 WP_000242755.1 3694077..3694709(+) (crp) [Escherichia coli strain GE3]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=133133 AKN41_RS18205 WP_000242755.1 3694077..3694709(+) (crp) [Escherichia coli strain GE3]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467