Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   Csca_RS20000 Genome accession   NZ_CP009933
Coordinates   4473055..4473501 (+) Length   148 a.a.
NCBI ID   WP_029161053.1    Uniprot ID   A0A0E3M802
Organism   Clostridium scatologenes strain ATCC 25775     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4468055..4478501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Csca_RS19960 (CSCA_4136) - 4468339..4468839 (+) 501 WP_029161060.1 DUF4446 family protein -
  Csca_RS19965 (CSCA_4137) - 4468897..4469151 (+) 255 WP_029161059.1 YkuS family protein -
  Csca_RS19970 (CSCA_4138) yyaC 4469175..4469780 (-) 606 WP_029161058.1 spore protease YyaC -
  Csca_RS19975 (CSCA_4139) ytvI 4469894..4470949 (-) 1056 WP_029161057.1 sporulation integral membrane protein YtvI -
  Csca_RS19980 (CSCA_4140) - 4471314..4471565 (+) 252 WP_029161056.1 DUF3343 domain-containing protein -
  Csca_RS19985 (CSCA_4141) - 4471581..4472453 (+) 873 WP_029161055.1 mechanosensitive ion channel family protein -
  Csca_RS19990 (CSCA_4142) - 4472458..4472661 (+) 204 WP_007063407.1 DUF951 domain-containing protein -
  Csca_RS19995 (CSCA_4143) rpsF 4472756..4473043 (+) 288 WP_029161054.1 30S ribosomal protein S6 -
  Csca_RS20000 (CSCA_4144) ssbA 4473055..4473501 (+) 447 WP_029161053.1 single-stranded DNA-binding protein Machinery gene
  Csca_RS20005 (CSCA_4145) rpsR 4473520..4473777 (+) 258 WP_007063410.1 30S ribosomal protein S18 -
  Csca_RS20010 (CSCA_4146) - 4474074..4474391 (+) 318 WP_007063411.1 MazG-like family protein -
  Csca_RS20015 (CSCA_4147) - 4474403..4475386 (+) 984 WP_029161052.1 YybS family protein -
  Csca_RS20020 (CSCA_4148) - 4475401..4477386 (+) 1986 WP_029161051.1 DHH family phosphoesterase -
  Csca_RS20025 (CSCA_4149) rplI 4477386..4477829 (+) 444 WP_029161050.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16231.10 Da        Isoelectric Point: 4.7915

>NTDB_id=133082 Csca_RS20000 WP_029161053.1 4473055..4473501(+) (ssbA) [Clostridium scatologenes strain ATCC 25775]
MNKVVLIGRLTKDPELKFTPGNGTAVATFTLAVDRKFSRDGQKEADFIPIVVWGKQAESTANYMSKGKLMGVCGRIQTRT
YDAKDGTRRYVTEVVADEVQFLEWGSGNKSAASSFNEASSEQFGNTQGFNEKAYGEDITPVDDGDIPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=133082 Csca_RS20000 WP_029161053.1 4473055..4473501(+) (ssbA) [Clostridium scatologenes strain ATCC 25775]
ATGAACAAGGTTGTTTTAATTGGAAGATTAACCAAAGATCCTGAGTTAAAATTTACTCCAGGAAATGGTACAGCTGTTGC
CACCTTTACTTTAGCCGTTGATAGAAAGTTTTCTAGAGATGGCCAAAAAGAAGCTGATTTTATCCCTATAGTAGTATGGG
GAAAACAAGCTGAATCTACAGCAAACTATATGAGCAAAGGTAAGCTTATGGGAGTTTGTGGTAGAATTCAAACTAGAACA
TATGATGCTAAAGACGGTACTAGAAGATATGTTACTGAAGTTGTTGCAGATGAGGTACAATTCCTTGAATGGGGAAGTGG
AAATAAATCAGCAGCATCATCATTTAACGAAGCTTCATCTGAACAATTTGGAAATACTCAAGGCTTTAATGAAAAAGCCT
ATGGAGAGGATATCACTCCAGTAGATGATGGAGATATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E3M802

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.093

100

0.547
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.351

75

0.385
  ssb Latilactobacillus sakei subsp. sakei 23K

52.885

70.27

0.372

Multiple sequence alignment