Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   BG04_RS10710 Genome accession   NZ_CP009920
Coordinates   1966459..1966821 (-) Length   120 a.a.
NCBI ID   WP_016765913.1    Uniprot ID   A0A1I2XGS5
Organism   Priestia megaterium NBRC 15308 = ATCC 14581     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1961459..1971821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG04_RS10700 (BG04_2125) - 1961967..1964597 (+) 2631 WP_034648299.1 DEAD/DEAH box helicase -
  BG04_RS10705 (BG04_2126) - 1964895..1965941 (+) 1047 WP_034648296.1 LysM peptidoglycan-binding domain-containing protein -
  BG04_RS10710 (BG04_2127) ssbB 1966459..1966821 (-) 363 WP_016765913.1 single-stranded DNA-binding protein Machinery gene
  BG04_RS10715 (BG04_2128) - 1966918..1967355 (+) 438 WP_013085451.1 YwpF-like family protein -
  BG04_RS10720 (BG04_2130) - 1967879..1968301 (+) 423 WP_034648293.1 helix-turn-helix domain-containing protein -
  BG04_RS10725 (BG04_2131) fabZ 1968330..1968764 (-) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  BG04_RS10730 (BG04_2132) - 1968848..1969669 (-) 822 WP_034648291.1 flagellar hook-basal body protein -
  BG04_RS10735 (BG04_2133) - 1969693..1970517 (-) 825 WP_034648289.1 flagellar hook-basal body protein -
  BG04_RS10740 (BG04_2134) - 1970632..1971633 (-) 1002 WP_013085455.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13472.19 Da        Isoelectric Point: 7.1647

>NTDB_id=132962 BG04_RS10710 WP_016765913.1 1966459..1966821(-) (ssbB) [Priestia megaterium NBRC 15308 = ATCC 14581]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSGFSSFDSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=132962 BG04_RS10710 WP_016765913.1 1966459..1966821(-) (ssbB) [Priestia megaterium NBRC 15308 = ATCC 14581]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACAAAAAAACCTGAGCTTAGATATACCCATGAAGGGATTGCAGTATC
TACTATTACTTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGTGTAGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCTGTTAAGTTTTTAAGTGGAAAGCC
ATCCGGTTTTTCTTCATTTGATTCAAATCAACAAGAAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I2XGS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.813

89.167

0.533
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508
  ssb Latilactobacillus sakei subsp. sakei 23K

52.83

88.333

0.467

Multiple sequence alignment