Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   SSAL8618_RS06085 Genome accession   NZ_CP009913
Coordinates   1260648..1262063 (-) Length   471 a.a.
NCBI ID   WP_004182392.1    Uniprot ID   A0AB33ZDN7
Organism   Streptococcus salivarius strain NCTC 8618     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1255648..1267063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL8618_RS06055 (SSAL8618_06055) - 1256285..1256683 (-) 399 WP_021144038.1 cytidine deaminase -
  SSAL8618_RS06060 (SSAL8618_06060) deoC 1256688..1257332 (-) 645 WP_014634599.1 deoxyribose-phosphate aldolase -
  SSAL8618_RS06065 (SSAL8618_06065) - 1257366..1258643 (-) 1278 WP_014634600.1 pyrimidine-nucleoside phosphorylase -
  SSAL8618_RS06070 (SSAL8618_06070) - 1258640..1259230 (-) 591 WP_014633038.1 class I SAM-dependent methyltransferase -
  SSAL8618_RS06075 (SSAL8618_06075) coaA 1259344..1260264 (+) 921 WP_038676170.1 type I pantothenate kinase -
  SSAL8618_RS06080 (SSAL8618_06080) rpsT 1260334..1260570 (+) 237 WP_004182129.1 30S ribosomal protein S20 -
  SSAL8618_RS06085 (SSAL8618_06085) ciaH 1260648..1262063 (-) 1416 WP_004182392.1 cell wall metabolism sensor histidine kinase WalK Regulator
  SSAL8618_RS06090 (SSAL8618_06090) ciaR 1262053..1262727 (-) 675 WP_002891134.1 response regulator transcription factor Regulator
  SSAL8618_RS06095 (SSAL8618_06095) - 1262925..1264595 (-) 1671 WP_004182072.1 formate--tetrahydrofolate ligase -
  SSAL8618_RS06100 (SSAL8618_06100) - 1264790..1265473 (+) 684 WP_022496696.1 phosphopantothenate--cysteine ligase -
  SSAL8618_RS06105 (SSAL8618_06105) coaC 1265466..1266011 (+) 546 WP_022496697.1 phosphopantothenoylcysteine decarboxylase -
  SSAL8618_RS06110 (SSAL8618_06110) - 1266040..1266612 (+) 573 WP_022496698.1 ECF transporter S component -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 53504.28 Da        Isoelectric Point: 8.7661

>NTDB_id=132907 SSAL8618_RS06085 WP_004182392.1 1260648..1262063(-) (ciaH) [Streptococcus salivarius strain NCTC 8618]
MLTKFFNYLFRRIKSDGFKSFIHFFATFSGIFLIMTVMILQILSYGVYSNVDSSLKMAATKTNSYLEMEMLKRELFLTSE
VDQNNTTTIYQAYDTKESTAETPDSSGSKKEPKKKSKIEDTPHDLSVAANTSVLVLDKNGKVLNVVDKFSSLSNLPIDKN
NIDVISKGSAQNYFDQTEKYRLITEKVDNSLYPDAKYLVIAINTTQLEEATERYVKLIVIMMSFFWLLSVAASMYLAKWS
RRPIQESLEKQKAFVENASHELRTPLAVIQNRLEVLFRKPESTILDNSENIASSLDEVRNMRLLTTNLLNLARRDDGIKP
EIETLEPAFFDTVFTNYAMIAEENEKGFTAQNQVGRPIQTDKTLLKQLMTILFDNAIKYTEDDGHVTFTVRTNDRHLYIS
VADNGPGISDSDKKKIFDRFYRVDKARTRQKGGFGLGLSLAQQIVLALKGTIVVKDNQPKGTIFEVKITGV

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=132907 SSAL8618_RS06085 WP_004182392.1 1260648..1262063(-) (ciaH) [Streptococcus salivarius strain NCTC 8618]
ATGCTGACTAAATTTTTCAATTATCTCTTTAGGAGAATCAAGTCAGACGGATTTAAGTCGTTCATTCATTTCTTTGCCAC
TTTTTCTGGTATTTTCCTTATCATGACTGTCATGATTTTGCAGATTCTGAGTTACGGCGTTTATTCCAATGTGGACTCTA
GTCTGAAAATGGCAGCCACTAAAACCAATTCTTATTTAGAAATGGAAATGCTAAAACGGGAACTTTTTCTGACTTCTGAG
GTAGATCAAAATAATACGACAACCATTTACCAAGCCTATGATACTAAAGAGTCGACAGCTGAAACACCTGACTCGAGTGG
CTCTAAGAAAGAGCCTAAGAAGAAATCAAAAATTGAAGATACCCCTCACGATTTATCTGTTGCGGCAAATACTAGTGTCT
TGGTACTTGATAAGAATGGAAAAGTCCTTAATGTTGTTGATAAATTTTCAAGCTTATCCAATTTACCAATAGACAAAAAT
AACATTGATGTTATCAGCAAGGGAAGTGCTCAGAATTATTTCGATCAAACGGAAAAGTACCGTCTGATTACTGAAAAAGT
AGATAATAGCCTCTATCCTGATGCTAAGTACCTTGTTATTGCGATTAATACAACTCAATTGGAAGAAGCCACTGAACGTT
ATGTTAAGCTAATTGTCATCATGATGAGTTTCTTCTGGCTTTTATCTGTTGCGGCTAGTATGTATTTGGCTAAGTGGTCA
AGACGTCCTATCCAGGAAAGCTTGGAGAAGCAGAAGGCTTTTGTTGAGAATGCTAGCCATGAGTTACGGACACCGCTTGC
TGTGATTCAAAACAGATTAGAAGTTCTTTTCCGCAAGCCTGAGAGCACCATTCTAGATAATTCAGAGAATATTGCTTCAA
GTCTTGATGAAGTACGCAACATGCGTCTTTTGACGACTAATCTTTTGAACTTGGCTCGTCGTGACGATGGTATTAAACCA
GAAATCGAAACCTTAGAACCTGCTTTCTTTGATACAGTCTTTACCAACTATGCCATGATTGCAGAAGAAAATGAGAAAGG
TTTCACGGCTCAAAACCAAGTTGGTCGTCCAATCCAGACTGATAAAACGTTATTGAAACAGTTAATGACCATCTTATTTG
ATAATGCGATTAAATATACGGAAGATGACGGACATGTTACCTTTACTGTCCGCACTAATGACCGGCATCTTTATATTTCT
GTAGCTGATAATGGTCCTGGAATATCAGATAGTGATAAGAAAAAAATCTTTGATCGATTTTATCGCGTAGATAAGGCTAG
AACCAGACAAAAAGGTGGGTTTGGACTTGGCTTATCCCTAGCGCAACAAATTGTTTTAGCCCTTAAAGGAACAATTGTTG
TTAAAGATAATCAACCAAAGGGAACGATTTTTGAAGTTAAGATCACCGGAGTTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(361-468)

His Kinase A (phospho-acceptor) domain (HisKA)

(252-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

56.739

97.665

0.554
  ciaH Streptococcus pneumoniae Rx1

50.216

98.514

0.495
  ciaH Streptococcus pneumoniae D39

50.216

98.514

0.495
  ciaH Streptococcus pneumoniae R6

50.216

98.514

0.495
  ciaH Streptococcus pneumoniae TIGR4

50.216

98.514

0.495

Multiple sequence alignment