Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   SSAL8618_RS03300 Genome accession   NZ_CP009913
Coordinates   666756..667757 (+) Length   333 a.a.
NCBI ID   WP_002886078.1    Uniprot ID   A0AB37CMJ0
Organism   Streptococcus salivarius strain NCTC 8618     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 661756..672757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL8618_RS03280 (SSAL8618_03280) smpB 662874..663338 (+) 465 WP_002885905.1 SsrA-binding protein SmpB -
  SSAL8618_RS03285 (SSAL8618_03285) - 663485..664891 (+) 1407 WP_004182928.1 Cof-type HAD-IIB family hydrolase -
  SSAL8618_RS03290 (SSAL8618_03290) - 664893..665261 (+) 369 WP_002886108.1 S1 RNA-binding domain-containing protein -
  SSAL8618_RS03295 (SSAL8618_03295) - 665361..666443 (-) 1083 WP_002886210.1 Xaa-Pro peptidase family protein -
  SSAL8618_RS03300 (SSAL8618_03300) ccpA 666756..667757 (+) 1002 WP_002886078.1 catabolite control protein A Regulator
  SSAL8618_RS03305 (SSAL8618_03305) - 667817..668884 (+) 1068 WP_002886051.1 MmcQ/YjbR family DNA-binding protein -
  SSAL8618_RS03310 (SSAL8618_03310) - 668897..670012 (+) 1116 WP_004182927.1 glycerate kinase -
  SSAL8618_RS03315 (SSAL8618_03315) - 670052..670507 (-) 456 WP_002885945.1 YueI family protein -
  SSAL8618_RS03320 (SSAL8618_03320) eno 670714..672018 (+) 1305 WP_002886048.1 surface-displayed alpha-enolase -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36660.58 Da        Isoelectric Point: 5.4827

>NTDB_id=132897 SSAL8618_RS03300 WP_002886078.1 666756..667757(+) (ccpA) [Streptococcus salivarius strain NCTC 8618]
MNTDETITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFA
TLARGIDDIATMYKYNIVLASSDENDDHEVTVINSLFAKQVDGIIFMGYHLTEKIRAEFSRTRTPIVLAGTVDLEHQLPS
VNIDYKAAVEDSITQLAKNNEKVAFVSGPLIDDINGKLRLAGYKAGLEKNNLRYNEGLVFEAKYSYKDGFDLAQRVLNSG
ATAAYVGEDELAAGLLNGLFAAGKSVPEDFEIITSNDSPITSYTRPNLSSINHPLYDLGAVSMRMLTKIMNKEELEEKDV
ILNHGITLRQSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=132897 SSAL8618_RS03300 WP_002886078.1 666756..667757(+) (ccpA) [Streptococcus salivarius strain NCTC 8618]
ATGAATACTGATGAAACAATTACTATATACGACGTTGCGCGTGAAGCAGGTGTTTCGATGGCGACTGTGTCTCGTGTGGT
AAATGGAAATAAAAATGTAAAAGAAAACACCCGAAAAAAAGTGCTTGAGGTCATTGATCGTTTGGATTACCGTCCAAATG
CGGTTGCGCGTGGCTTGGCGAGTAAGAAAACCACTACTGTAGGAGTTGTCATCCCAAATATTGCTAATAGTTATTTTGCT
ACTTTAGCAAGGGGGATTGATGATATTGCAACCATGTACAAGTATAATATTGTTCTTGCATCTAGTGATGAAAATGACGA
TCACGAAGTTACCGTGATTAACTCTCTATTTGCCAAACAAGTAGACGGTATCATCTTCATGGGTTACCACTTGACGGAAA
AAATTCGTGCAGAATTTTCCCGTACTCGTACGCCGATTGTCCTAGCAGGAACAGTGGACCTCGAACACCAATTACCGAGT
GTTAACATCGACTATAAAGCTGCCGTTGAGGATTCTATAACACAGCTTGCCAAGAATAATGAAAAGGTTGCCTTTGTATC
AGGGCCACTAATTGATGATATTAATGGCAAGCTCCGTCTAGCTGGTTATAAGGCTGGACTTGAAAAGAATAATTTGCGCT
ACAATGAAGGACTAGTCTTTGAAGCTAAATATAGCTATAAAGATGGCTTTGATCTAGCACAACGTGTCTTGAACTCTGGT
GCCACTGCTGCCTATGTTGGAGAAGATGAATTGGCTGCAGGTCTCTTGAATGGCCTCTTTGCTGCAGGTAAATCAGTTCC
AGAAGACTTCGAAATCATCACAAGCAATGACTCACCAATTACAAGCTATACACGTCCAAACCTTTCTAGTATTAATCATC
CTCTCTATGATTTAGGGGCAGTTAGCATGCGTATGTTGACTAAAATCATGAATAAGGAAGAACTTGAAGAAAAAGATGTT
ATTCTTAATCACGGTATTACCTTACGTCAGTCAACAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

77.778

100

0.778

  ccpA Streptococcus pneumoniae D39

75.676

100

0.757

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.891

99.399

0.556


Multiple sequence alignment