Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   OB04_RS18115 Genome accession   NZ_CP009796
Coordinates   3497131..3497820 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SG6     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3492131..3502820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB04_RS18080 (OB04_03552) flgN 3492312..3492794 (-) 483 WP_014481048.1 flagellar protein FlgN -
  OB04_RS18085 (OB04_03553) flgM 3492810..3493076 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  OB04_RS18090 (OB04_03554) yvyF 3493157..3493576 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  OB04_RS18095 (OB04_03555) comFC 3493649..3494371 (-) 723 WP_038429729.1 comF operon protein ComFC Machinery gene
  OB04_RS18100 (OB04_03556) comFB 3494335..3494631 (-) 297 WP_015483764.1 late competence protein ComFB -
  OB04_RS18105 (OB04_03557) comFA 3494691..3496082 (-) 1392 WP_038429730.1 ATP-dependent helicase ComFA Machinery gene
  OB04_RS18110 (OB04_03558) fakBA 3496188..3497033 (-) 846 WP_038429731.1 DegV family protein -
  OB04_RS18115 (OB04_03559) degU 3497131..3497820 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  OB04_RS18120 (OB04_03560) degS 3497903..3499060 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  OB04_RS18125 (OB04_03561) yvyE 3499277..3499930 (+) 654 WP_003227979.1 YigZ family protein -
  OB04_RS18130 (OB04_03562) tagV 3499930..3501105 (+) 1176 WP_038429732.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  OB04_RS18135 (OB04_03563) tagO 3501178..3502254 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=132365 OB04_RS18115 WP_003219701.1 3497131..3497820(-) (degU) [Bacillus subtilis strain SG6]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=132365 OB04_RS18115 WP_003219701.1 3497131..3497820(-) (degU) [Bacillus subtilis strain SG6]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGATCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment