Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   OB04_RS18105 Genome accession   NZ_CP009796
Coordinates   3494691..3496082 (-) Length   463 a.a.
NCBI ID   WP_038429730.1    Uniprot ID   -
Organism   Bacillus subtilis strain SG6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3489691..3501082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB04_RS18070 (OB04_03550) flgL 3489863..3490759 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  OB04_RS18075 (OB04_03551) flgK 3490770..3492293 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  OB04_RS18080 (OB04_03552) flgN 3492312..3492794 (-) 483 WP_014481048.1 flagellar protein FlgN -
  OB04_RS18085 (OB04_03553) flgM 3492810..3493076 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  OB04_RS18090 (OB04_03554) yvyF 3493157..3493576 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  OB04_RS18095 (OB04_03555) comFC 3493649..3494371 (-) 723 WP_038429729.1 comF operon protein ComFC Machinery gene
  OB04_RS18100 (OB04_03556) comFB 3494335..3494631 (-) 297 WP_015483764.1 late competence protein ComFB -
  OB04_RS18105 (OB04_03557) comFA 3494691..3496082 (-) 1392 WP_038429730.1 ATP-dependent helicase ComFA Machinery gene
  OB04_RS18110 (OB04_03558) fakBA 3496188..3497033 (-) 846 WP_038429731.1 DegV family protein -
  OB04_RS18115 (OB04_03559) degU 3497131..3497820 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  OB04_RS18120 (OB04_03560) degS 3497903..3499060 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  OB04_RS18125 (OB04_03561) yvyE 3499277..3499930 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52578.71 Da        Isoelectric Point: 10.0082

>NTDB_id=132364 OB04_RS18105 WP_038429730.1 3494691..3496082(-) (comFA) [Bacillus subtilis strain SG6]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENESNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SVDQTLQFAVLKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFKGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=132364 OB04_RS18105 WP_038429730.1 3494691..3496082(-) (comFA) [Bacillus subtilis strain SG6]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATTAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAACTGGAAGTCTATTAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCGCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGTTGATCAAACCCTTCAATTCGCTGTTCTAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCATTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGTCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

99.568

100

0.996

Multiple sequence alignment